DIPP Publications (1996-2023)

DIPP publications

Peer-reviewed original scientific articles

1996 | 1997 | 1998 | 1999 | 2000 | 2001 | 2002 | 2003 | 2004 | 2005 | 2006 | 2007 | 2008 | 2009 | 2010 | 2011 | 2012 | 2013 | 2014 | 2015 | 2016 | 2017 | 2018 | 2019 | 2020 | 2021 | 2022 | 2023 | 2024

Review articles | Conference proceedings

1996

1. Ilonen J, Reijonen H, Knip M, Simell O. Population-based genetic screening for IDDM susceptibility as a source of HLA-genotyped control subjects (Letter). Diabetologia 1996 Jan;39:123. doi: 10.1007/BF00400423.

1997

2. Halminen M, Ilonen J, Julkunen I, Ruuskanen O, Simell O, Mäkelä MJ. Expression of MxA Protein in Blood Lymphocytes Discriminates between Viral and Bacterial Infections in Febrile Children. Pediatr Res 1997 May;41:647-650. doi: 10.1203/00006450-199705000-00008.

1998

3. Hahl J, Simell T, Ilonen J, Knip M, Simell O. Costs of predicting IDDM. Diabetologia 1998 Jan;41:79-85. doi: 10.1007/s001250050870.

4. Andersson A-M, Toppari J, Haavisto A-M, Petersen JH, Simell T, Simell O, Skakkebæk NE. Longitudinal Reproductive Hormone Profiles in Infants: Peak of Inhibin B Levels in Infant Boys Exceeds Levels in Adult Men. J Clin Endocrinol Metab. 1998 Feb;83:675-681. doi: 10.1210/jcem.83.2.4603.

5. Juhela S, Hyöty H, Lönnrot M, Roivainen M, Simell O, Ilonen J. Enterovirus Infections and Enterovirus Specific T-Cell Responses in Infancy. J Med Virol 1998 Mar;54:226-232. doi: 10.1002/(sici)1096-9071(199803)54:3<226::aid-jmv14>3.0.co;2-f.

6. Ilonen J, Simell O, Knip M, Åkerblom HK. Screening for genetic IDDM risk and prevention trials in infancy. Diabetes Metab Rev 1998 Jun;14:188. doi: 10.1002/(SICI)1099-0895(199806)14:2<188::AID-DMR1210>3.0.CO;2-0.

7. Nejentsev S, Koskinen S, Sjöroos M, Reijonen H, Schwartz EI, Kovalchuk L, Sochnev A, Adojaan B, Podar T, Knip M, Simell O, Koskenvuo M, Åkerblom HK, Ilonen J. Distribution of insulin-dependent diabetes mellitus (IDDM)-related HLA alleles correlates with the difference in IDDM incidence in four populations of eastern Baltic region. Tissue Antigens 1998 Nov;52:473-477. doi: 10.1111/j.1399-0039.1998.tb03074.x.

1999

8. Juhela S, Hyöty H, Uibo R, Meriste SH, Uibo O, Lönnrot M, Halminen M, Simell O, Ilonen J. Comparison of enterovirus-specific cellular immunity in two populations of young children vaccinated with inactivated or live poliovirus vaccines. Clin Exp Immunol 1999 Jul;117:100-105. doi: 10.1046/j.1365-2249.1999.00954.x.

9. Vaarala O, Knip M, Paronen J, Hämäläinen A-M, Muona P, Väätäinen M, Ilonen J, Simell O, Åkerblom HK. Cow´s Milk Formula Feeding Induces Primary Immunization to Insulin in Infants at Genetic Risk for Type 1 Diabetes. Diabetes 1999 Jul;48:1389-1394. doi: 10.2337/diabetes.48.7.1389.

10. Nejentsev S, Sjöroos M, Soukka T, Knip M, Simell O, Lövgren T, Ilonen J. Population-based genetic screening for the estimation of Type 1 diabetes mellitus risk in Finland: selective genotyping of markers in the HLA-DQB1, HLA-DQA1 and HLA-DRB1 loci. Diabetic Med 1999 Dec;16:985-992. doi: 10.1046/j.1464-5491.1999.00186.x.

2000

11. Nejentsev S, Laine A-P. Simell O, Ilonen J. Intercellular adhesion molecule-1 (ICAM-1) K469E polymorphism: no association with type 1 diabetes among Finns. Tissue Antigens 2000 Jun;55:568-570. doi: 10.1034/j.1399-0039.2000.550608.x.

12. Ilonen J, Reijonen H, Green A, Reunanen A, Knip M, Simell O, Åkerblom HK, the Childhood Diabetes in Finland Study Group. Geographical differences within Finland in the frequency of HLA-DQ genotypes associated with Type 1 diabetes susceptibility. Eur J Immunogenet 2000 Aug;27:225-230. doi: 10.1046/j.1365-2370.2000.00223.x.

13. Juhela S, Hyöty H, Roivainen M, Härkönen T, Putto-Laurila A, Simell O, Ilonen J. T-Cell Responses to Enterovirus Antigens in Children with Type 1 Diabetes. Diabetes 2000 Aug;49:1308-1313. doi:10.2337/diabetes.49.8.1308.

14. Lönnrot M, Korpela K, Knip M, Ilonen J, Simell O, Korhonen S, Savola K, Muona P, Simell T, Koskela P, Hyöty H. Enterovirus Infection as a Risk Factor for β-Cell Autoimmunity in a Prospectively Observed Birth Cohort: the Finnish Diabetes Prediction and Prevention Study. Diabetes 2000 Aug;49:1314-1318. doi:10.2337/diabetes.49.8.1314.

15. Nejentsev S, Gombos Z, Laine A-P, Veijola R, Knip M, Simell O, Vaarala O, Åkerblom HK, Ilonen J. Non-Class II HLA Gene Associated with Type 1 Diabetes Maps to the 240-kb Region Near HLA-B. Diabetes 2000 Dec;49:2217-2221. doi:10.2337/diabetes.49.12.2217.

2001

16. Halminen M, Juhela S, Vaarala O, Simell O, Ilonen J. Induction of Interferon-γ and IL-4 Production by Mitogen and Specific Antigens in Peripheral Blood Lymphocytes of Type 1 Diabetes Patients. Autoimmunity 2001 Jan;34:1-8. doi: 10.3109/08916930108994120.

17. Kimpimäki T, Erkkola M, Korhonen S, Kupila A, Virtanen SM, Ilonen J, Simell O, Knip M. Short-term exclusive breastfeeding predisposes young children with increased genetic risk of type 1 diabetes to progressive beta-cell autoimmunity. Diabetologia 2001 Jan;44:63-69. doi: 10.1007/s001250051581.

18. Kupila A, Muona P, Simell T, Arvilommi P, Savolainen H, Hämäläinen A-M, Korhonen S, Kimpimäki T, Sjöroos M, Ilonen J, Knip M, Simell O. Feasibility of genetic and immunological prediction of Type 1 diabetes in a population-based birth cohort. Diabetologia 2001Mar;44:290-297. doi: 10.1007/s001250051616.

19. Halminen M, Simell O, Knip M, Ilonen J. Cytokine Expression in Unstimulated Peripheral Blood Mononuclear Cells of Children with Type 1 Diabetes and Subjects Positive for Diabetes-Associated Autoantibodies. Scand J Immunol 2001 May;53:510-513. doi: 10.1046/j.1365-3083.2001.00904.x.

20. Marttila J, Juhela S, Vaarala O, Hyöty H, Roivainen M, Hinkkanen A, Vilja P, Simell O, Ilonen J. Responses of Coxsackievirus B4-Specific T-Cell Lines to 2C Protein – Characterization of Epitopes with Special Reference to the GAD65 Homology Region. Virology 2001May;284:131-141. doi: 10.1006/viro.2001.0917.

21. Sadeharju K, Lönnrot M, Kimpimäki T, Savola K, Erkkilä S, Kalliokoski T, Savolainen P, Koskela P, Ilonen J, Simell O, Knip M, Hyöty H. Enterovirus antibody levels during the first two years of life in prediabetic autoantibody-positive children. Diabetologia 2001 Jul;44:818-823. doi: 10.1007/s001250100560.

22. Kimpimäki T, Kupila A, Hämäläinen A-M, Kukko M, Kulmala P, Savola K, Simell T, Keskinen P, Ilonen J, Simell O, Knip M. The First Signs of β-Cell Autoimmunity Appear in Infancy in Genetically Suspectible Children from the General Population: The Finnish Type 1 Diabetes Prediction and Prevention Study. J Clin Endocrinol  Metabol 2001 Oct;86:4782-4788. doi: 10.1210/jcem.86.10.7907.

23. Heino L, Lönnrot M, Knip M, Kupila A, Erkkilä S, Toivonen A, Vähäsalo P, Ilonen J, Simell O, Hyöty H. No evidence of abnormal regulation of antibody response to coxsackievirus B4 antigen in prediabetic children. Clin Exp Immunol 2001 Dec;126:432-436. doi: 10.1111/j.1365-2249.2001.01691.x.

2002

24. Hämäläinen A-M, Ilonen J, Simell O, Savola K, Kulmala P, Kupila A, Simell T, Erkkola R, Knip M. Prevalence and fate of type 1 diabetes-associated autoantibodies in cord blood samples from newborn infants of non-diabetic mothers. Diabetes Metab Res Rev 2002 Jan-Feb;18:57-63. doi: 10.1002/dmrr.232.

25. Kupila A, Keskinen P, Simell T, Erkkilä S, Arvilommi P, Korhonen S, Kimpimäki T, Sjöroos M, Ronkainen M, Ilonen J, Knip M, Simell O. Genetic Risk Determines the Emergence of Diabetes-Associated Autoantibodies in Young Children. Diabetes 2002 Mar;51:646-651. doi:10.2337/diabetes.51.3.646.

26. Vaarala O, Klemetti P, Juhela S, Simell O, Hyöty H, Ilonen J. Effect of coincident enterovirus infection and cow´s milk exposure on immunisation to insulin in early infancy. Diabetologia 2002 Apr;45:531-534. doi: 10.1007/s00125-002-0787-8.

27. Blomqvist M, Juhela S, Erkkilä S, Korhonen S, Simell T, Kupila A, Vaarala O, Simell O, Knip M, Ilonen J. Rotavirus infections and development of diabetes-associated autoantibodies during the first 2 years of life. Clin Exp Immunol 2002 Jun;128:511-515. doi: 10.1046/j.1365-2249.2002.01842.x.

28. Turpeinen H, Laine A-P, Nejentsev S, Sjöroos M, Simell O, Veijola R, Knip M, Åkerblom HK, Ilonen J. CD86 gene polymorphisms: no association with Type 1 diabetes among Finnish subjects. Diabetologia 2002 Jul;45:1041-1042. doi: 10.1007/s00125-002-0870-1.

29. Kimpimäki T, Kulmala P, Savola K, Kupila A, Korhonen S, Simell T, Ilonen J, Simell O, Knip M. Natural History of β-Cell Autoimmunity in Young Children with Increased Genetic Susceptibility to Type 1 Diabetes Recruited from the General Population. J Clin Endocrinol Metab 2002 Oct;87:4572-4579. doi: 10.1210/jc.2002-020018.

30. Keskinen P, Korhonen S, Kupila A, Veijola R, Erkkilä S, Savolainen H, Arvilommi P, Simell T, Ilonen J, Knip M, Simell O. First-phase insulin response in young healthy children at genetic and immunological risk for Type 1 diabetes. Diabetologia 2002 Dec;45:1639-1648. doi: 10.1007/s00125-002-0981-8.

2003

31. Kukko M, Kimpimäki T, Kupila A, Korhonen S, Kulmala P, Savola K, Simell T, Keskinen P, Ilonen J, Simell O, Knip M. Signs of beta-cell autoimmunity and HLA-defined diabetes susceptibility in the Finnish population: the sib cohort from the Type 1 Diabetes Prediction and Prevention Study. Diabetologia 2003 Jan;46:65-70. doi: 10.1007/s00125-002-0976-5.

32. Salminen K, Sadeharju K, Lönnrot M, Vähäsalo P, Kupila A, Korhonen S, Ilonen J, Simell O, Knip M, Hyöty H. Enterovirus Infections Are Associated With the Induction of β-Cell Autoimmunity in a Prospective Birth Cohort Study. J Med Virol 2003 Jan;69:91-98. doi: 10.1002/jmv.10260.

33. Hahl J, Simell T, Kupila A, KeskinenP, KnipM, Ilonen J, Simell O. A Simulation Model for Estimating Direct Costs of Type 1 Diabetes Prevention. PharmacoEconomics 2003 Apr;21:295-303. doi: 10.2165/00019053-200321050-00001.

34. Kupila A, Sipilä J, Keskinen P, Simell T, Knip M, Pulkki K, Simell O. Intranasally administered insulin intended for prevention of type 1 diabetes – a safety study in healthy adults. Diabetes Metab Res Rev 2003 Sep-Oct;19:415-420. doi: 10.1002/dmrr.397.

35. Turpeinen H, Hermann R, Vaara S, Laine A-P, Simell O, Knip M, Veijola R, Ilonen J. Vitamin D receptor polymorphisms: no association with type 1 diabetes in the Finnish population. Eur J Endocrinol 2003 Dec;149:591-596. doi. 10.1530/eje.0.1490591.

36. Gombos Z, Hermann R, Veijola R, Knip M, Simell O, Pollanen P, Ilonen J. Androgen receptor gene exon 1 CAG polymorphism in Finnish patients with childhood-onset type 1 diabetes. Eur J Endocrinol 2003 Dec;149:597-600. doi: 10.1530/eje.0.1490597.

2004

37. Marjamäki L, Räsänen M, Uusitalo L, Ahonen S, Veijola R, Knip M, Virtanen SM. Use of Vitamin D and other Dietary Supplements by Finnish Children at the age 2 and 3 years. Int J Vitam Nutr Res 2004 Jan;74:27-34. doi: 10.1024/0300-9831.74.1.27.

38. Laine AP, Hermann R, Knip M, Simell O, Åkerblom HK, Ilonen J. The human leukocyte antigen genotype has a modest effect on the insulin gene polymorphism-associated susceptibility to type 1 diabetes in the Finnish population. Tissue Antigens 2004 Jan;63:72-74. doi: 10.1111/j.1399-0039.2004.00153.x.

39. Hoppu S, Ronkainen MS, Kimpimäki T, Simell S, Korhonen S, Ilonen J, Simell O, Knip M. Insulin Autoantibody Isotypes during the Prediabetic Process in Young Children with Increased Genetic Risk of Type 1 Diabetes. Pediatric Res 2004 Feb;55:236-242. 10.1203/01.PDR.0000100905.41131.3F.

40. Salminen K, Vuorinen T, Oikarinen S, Helminen M, Simell S, Knip M, Ilonen J, Simell O, Hyöty H. Isolation of enterovirus strains from children with preclinical Type 1 diabetes. Diab Med 2004 Feb;21:156-164. doi: 10.1111/j.1464-5491.2004.01097.x.

41. Kukko M, Virtanen SM, Toivonen A, Simell S, Korhonen S, Ilonen J, Simell O, Knip M. Geographical Variation in Risk HLA-DQB1 Genotypes for Type 1 Diabetes and Signs of β-Cell Autoimmunity in a High-Incidence Country. Diabetes Care 2004 Mar;27:676-681. doi: 10.2337/diacare.27.3.676.

42. Mäkelä M, Marttila J, Simell O, Ilonen J. Rotavirus-specific T-cell responses in young prospectively followed-up children. Clin Exp Immunol 2004 Jul;137:173-178. doi: 10.1111/j.1365-2249.2004.02509.x.

43. Hermann R, Bartsocas CS, Soltész Gy, Vazeou A, Paschou P, Bozas E, Malamitsi-Puchner A, Simell O, Knip M, Ilonen J. Genetic screening for individuals at high risk for type I diabetes in the general population using HLA Class II alleles as disease markers. A comparison between three European populations with variable rates of disease incidence. Diabetes Metab Res Rev 2004 Jul-Aug;20:322-329. doi: 10.1002/dmrr.455.

2005

44. Erkkola M, Pigg H-M, Virta-Autio P, Hekkala A, Hyppönen E, Knip M, Virtanen SM. Infant feeding patterns in the Finnish type 1 diabetes prediction and prevention nutrition study cohort. Eur J Clin Nutr 2005 Jan;58:107-113. doi: 10.1038/sj.ejcn.1602045.

45. Westerlund A, Ankelo M, Ilonen J, Knip M, Simell O, Hinkkanen AE. Absence of avidity maturation of autoantibodies to the protein tyrosine phosphatase-like IA-2 molecule and glutamic acid decarboxylase (GAD65) during progression to type 1 diabetes. J Autoimmun 2005 Mar;24:153-167. doi: 10.1016/j.jaut.2004.12.001.

46. Kukko M, Kimpimäki T, Korhonen S, Kupila A, Simell S, Veijola R, Simell T, Ilonen J, Simell O, Knip M. Dynamics of Diabetes-Associated Autoantibodies in Young Children with Human Leukocyte Antigen-Conferred Risk of Type 1 Diabetes Recruited from the General Population. J Clin Endocrinol Metab 2005 May;90:2712-7. doi: 10.1210/jc.2004-1371.

47. Erkkola M, Kronberg-Kippilä C, Savilahti E, Kenward M, Salonen M, Ilonen J, Knip M, Åkerblom HK, Virtanen SM. Maternal consumption of dairy products during pregnancy and lactation, and the development of cow’s milk antibodies in the offspring. Acta Pædiatr 2005 Jun;94:696-704. doi: 10.1111/j.1651-2227.2005.tb01967.x.

48. Waris ME, Koskinen JO, Simell O, Knip M, Ilonen J. Onset of β-cell autoimmunity is not associated with elevated concentration of C-reactive protein in children at genetic risk for Type 1 diabetes. Diabetic Med 2005 Aug;22:1123-1124. doi: 10.1111/j.1464-5491.2005.01593.x.

49. Hermann R, Mantere J, Lipponen K, Veijola R, Soltesz G, Otonkoski T, Simell O, Knip M, Ilonen J. Lack of Association of PAX4 Gene With Type 1 Diabetes in the Finnish and Hungarian Populations. Diabetes 2005 Sep;54:2816-2819. doi: 10.2337/diabetes.54.9.2816.

50. Hermann R, Laine AP, Veijola R, Vahlberg T, Simell S, Lähde J, Simell O, Knip M, Ilonen J. The effect of HLA class II, insulin and CTLA4 gene regions on the development of humoral betacell autoimmunity. Diabetologia 2005 Sep;48:1766-1775. doi: 10.1007/s00125-005-1844-x.

51. Simell S, Kupila A, Hoppu S, Hekkala A, Simell T, Ståhlberg M-R, Viander M, Hurme T, Knip M, Ilonen J, Hyöty H, Simell O. Natural history of transglutaminase autoantibodies and mucosal changes in children carrying HLA-conferred celiac disease susceptibility. Scand J Gastroenterol 2005 Oct;40:1182-1191. doi: 10.1080/00365520510024034.

52. Öling V, Marttila J, Ilonen J, Kwok WW, Nepom G, Knip M, Simell O, Reijonen H. GAD65- and proinsulin-specific CD4+ T-cells detected by MHC class II tetramers in peripheral blood of type 1 diabetes patients and at-risksubjects. J Autoimmun 2005 Nov;25:235-43. doi: 10.1016/j.jaut.2005.09.018.

2006

53. Kukko M, Toivonen A, Kupila A, Korhonen S, Keskinen P, Veijola R, Virtanen SM, Ilonen J, Simell O, Knip M. Familial clustering of β-cell autoimmunity in initially non-diabetic children. Diabetes Metab Res Rev 2006 Jan-Feb;22:53-58. doi: 10.1002/dmrr.584.

54. Williams CH, Oikarinen S, Tauriainen S, Salminen K, Hyöty H, Stanway G. Molecular Analysis of an Echovirus 3 Strain Isolated From an Individual Concurrent with the Appearance of Islet Cell and IA-2 Autoantibodies. J Clin Microbiol 2006 Feb;44:441-448. doi: 10.1128/JCM.44.2.441–448.2006.

55. Hoppu S, Härkönen T, Ronkainen MS, Simell S, Hekkala A, Toivonen A, Ilonen J, Simell O. Knip M. IA-2 antibody isotypes and epitope specificity during the prediabetic process in children with HLA-conferred susceptibility to type I diabetes. Clin Exp Immunol 2006 Apr;144:59-66. doi: 10.1111/j.1365-2249.2006.03033.x.

56. Toivonen AM, Kimpimäki T, Kupila A, Korhonen S, Hyöty H, Virtanen SM, Ilonen J, Simell O, Knip M. Soluble adhesion molecules in young children with signs of β-cell autoimmunity – prospective follow-up from birth. Diabetes Metab Res Rev 2006 May-Jun;22:176-183. doi: 10.1002/dmrr.597.

57. Hermann R, Lipponen K, Kiviniemi M, Kakko T, Veijola R, Simell O, Knip M, Ilonen J. Lymphoid tyrosine phosphatase (LYP/PTPN22) Arg628Trp variant regulates insulin autoimmunity and progression to type 1 diabetes. Diabetologia 2006 Jun;49:1198-1208. doi: 10.1007/s00125-006-0225-4.

58. Virtanen SM, Kenward, MG, Erkkola M, Kautiainen S, Kronberg-Kippilä C, Hakulinen T, Ahonen S, Uusitalo L, Niinistö S, Veijola R, Simell O, Ilonen J, Knip M. Age at introduction of new foods and advanced beta cell autoimmunity in young children with HLA-conferred susceptibility to type 1 diabetes. Diabetologia 2006 Jul;49:1512-1521. doi: 10.1007/s00125-006-0236-1.

59. Mäkelä M, Öling V, Marttila J, Waris M, Knip M, Simell, Ilonen J. Rotavirus-specific Tcell responses and cytokine mRNA expression in children with diabetes-associated autoantibodies and type 1 diabetes. Clin Exp Immunol 2006 Aug;145:261-270. doi: 10.1111/j.1365-2249.2006.03146.x.

60. Mäkelä M, Vaarala O, Hermann R, Salminen K, Vahlberg T, Veijola R, Hyöty H, Knip M, Simell O, Ilonen J. Enteral virus infections in early childhood and an enhanced type 1 diabetes-associated antibody response to dietary insulin. J Autoimmun 2006 Aug;27:54-61. doi: 10.1016/j.jaut.2006.04.003.

61. Ronkainen MS, Hoppu S, Korhonen S, Simell S, Veijola R, Ilonen J, Simell O, Knip M. Early epitope- and isotype-specific humoral immune responses to GAD65 in young children with genetic susceptibility to type 1 diabetes. Eur J Endocrinol 2006 Oct;155:633-642. doi: 10.1530/eje.1.02271.

62. Vuorinen P, Rulli M, Kuusisto A, Simell S, Simell T, Vahlberg T, Ilonen J, Hyöty H, Knip M, Simell O. Time-Resolved Fluorescence Imaging of Islet Cell Autoantibodies. Ann NY Acad Sci 2006 Oct;1079:226-228. doi: 10.1196/annals.1375.035.

63. Arkkola T, Uusitalo U, Pietikäinen M, Metsälä J, Kronberg-Kippilä C, Erkkola M, Veijola R, Knip M, Virtanen SM, Ovaskainen M-L. Dietary intake and use of dietary supplements in relation to demographic variables among pregnant Finnish women. Br J Nutr 2006 Nov;96:913-920. doi: 10.1017/BJN20061929.

64. Räsänen M, Kronberg-Kippilä C, Ahonen S, Uusitalo L, Kautiainen S, Erkkola M, Veijola R, Knip M, Kaila M, Virtanen SM. Intake of vitamin D by Finnish children aged 3 months to 3 years in relation to sociodemographic factors. Eur J Clin Nutr 2006 Nov;60:1317-1322. doi: 10.1038/sj.ejcn.1602459.

65. Simonen P, Korhonen T, Simell T, Keskinen P, Kärkkäinen M, Knip M, Ilonen J, Simell O. Parental Reactions to Information About Increased Genetic Risk of Type 1 Diabetes Mellitus in Infants. Arch Pediatr Adolesc Med 2006 Nov;160:1131-1136. doi: 10.1001/archpedi.160.11.1131.

2007

66. Ankelo M, Westerlund A, Blomberg K, Knip M, Ilonen J, Hinkkanen AE. Time-Resolved Immunofluorometric Dual-Label Assay for Simultaneous Detection of Autoantibodies to GAD65 and IA-2 in Children with Type 1 Diabetes. Clin Chem 2007 Mar;53:472-479. doi: 10.1373/clinchem.2005.064568.

67. Tauriainen S, Martiskainen M, Oikarinen S, Lönnrot M, Viskari H, Ilonen J, Simell O, Knip M, Hyöty H. Human Parechovirus 1 Infections in Young Children – No Association With Type 1 Diabetes. J Med Virol 2007 Apr;79:457-462. doi: 10.1002/jmv.20831.

68. Westerlund A, Ankelo M, Simell S, Ilonen J, Knip M, Simell O, Hinkkanen AE. Affinity maturation of immunoglobulin A anti-tissue transglutaminase autoantibody during development of coeliac disease.  Clin Exp Immunol 2007 May ;148:230-240. doi: 10.1111/j.1365-2249.2007.03336.x.

69. Öling V, Marttila J, Knip M, Simell O, Ilonen J. Circulating CD4+CD25high Regulatory T Cells and Natural Killer T Cells in Children with Newly Diagnosed Type 1 Diabetes or with Diabetes-Associated Autoantibodies. Ann NY Acad Sci 2007 Jun;1107:363-372. doi: 10.1196/annals.1381.038.

70. Simell S, Hoppu S, Hekkala A, Simell T, Ståhlberg M-R, Viander M, Yrjänäinen H, Grönlund J, Markula P, Simell V, Knip M, Ilonen J, Hyöty H, Simell O. Fate of Five Celiac Disease-Associated Antibodies During Normal Diet in Genetically At-Risk Children Observed from Birth in a Natural History Study. Am J Gastroenterol 2007 Sep;102:2026-2035. doi: 10.1111/j.1572-0241.2007.01360.x.

71. Ankelo M, Kleimola V, Simell S, Simell O, Knip M, Jokisalo E, Tarkia M, Westerlund A, He Q, Viander M, Ilonen J, Hinkkanen AE. Antibody responses to deamidated gliadin peptide show high specificity and parallel antibodies to tissue transglutaminase in developing coeliac disease. Clin Exp Immunol 2007 Nov;150:285-293. doi: 10.1111/j.1365-2249.2007.03487.x

2008

72. Aittoniemi J, Turpeinen H, Tiittanen M, Knip M, Simell O, Ilonen J, Vaarala O. Relation among mannose-binding lectin 2 genotype, β-cell autoantibodies, and risk for type 1 diabetes in Finnish children. Hum Immunol 2008 Feb;69:108-111. doi: 10.1016/j.humimm.2008.01.007.

73. Arkkola T, Uusitalo U, Kronberg-Kippilä C, Männistö S, Virtanen M, Kenward MG, Veijola R, Knip M, Ovaskainen M-L, Virtanen SM. Seven distinct dietary patterns identified among pregnant Finnish women – associations with nutrient intake and sociodemographic factors. Public Health Nutr 2008 Feb;11:176-182. doi: 10.1017/S1368980007000420.

74. Aarnisalo J, Veijola R, Vainionpää R, Simell O, Knip M, Ilonen J. Cytomegalovirus infection in early infancy: risk of induction and progression of autoimmunity associated with type 1 diabetes. Diabetologia 2008 May;51:769-772. doi: 10.1007/s00125-008-0945-8.

75. Uusitalo L, Nevalainen J, Niinistö S, Alfthan G, Sundvall J, Korhonen T, Kenward MG, Oja H, Veijola R, Simell O, Ilonen J, Knip M, Virtanen SM. Serum α- and γ-tocopherol concentrations and risk of advanced beta cell autoimmunity in children with HLA-conferred susceptibility to type 1 diabetes mellitus. Diabetologia 2008 May;51:773-780. doi: 10.1007/s00125-008-0959-2.

76. Tauriainen S, Oikarinen S, Taimen K, Laranne J, Sipilä M, Lönnrot M, Ilonen J, Simell O, Knip M, Hyöty H. Temporal Relationship between Human Parechovirus 1 Infection and Otitis Media in Young Children. J Infect Dis 2008 Jul;198:35-40. doi: 10.1086/588677.

77. Aarnisalo J, Treszl A, Svec P, Marttila J, Öling V, Simell O, Knip M, Körner A, Madacsy L, Vasarhelyi B, Ilonen J, Hermann R. Reduced CD4+T cell activation in children with type 1 diabetes carrying the PTPN22/Lyp 620Trp variant. J Autoimmun 2008 Aug;31:13-21. doi: 10.1016/j.jaut.2008.01.001.

78. Uusitalo L, Kenward MG, Virtanen SM, Uusitalo U, Nevalainen J, Niinistö S, Kronberg-Kippilä C, Ovaskainen M-L, Marjamäki L, Simell O, Ilonen J, Veijola R, Knip M. Intake of antioxidant vitamins and trace elements during pregnancy and risk of advanced β cell autoimmunity in the child. Am J Clin Nutr 2008 Aug;88:458-464. doi: 10.1093/ajcn/88.2.458.

79. Marttila J, Huttunen S, Vaarala O, Suzuki K, Elliott JF, Närvänen A, Knip M, Simell O, Ilonen J. T-cell reactivity to insulin peptide A1-12 in children with recently diagnosed type 1 diabetes or multiple β-cell autoantibodies. J Autoimmun 2008 Sep;31:142-148. doi: 10.1016/j.jaut.2008.04.024.

80. Oikarinen M, Tauriainen S, Honkanen T, Vuori K, Karhunen P, Vasama-Nolvi C, Oikarinen S, Verbeke C, Blair GE, Rantala I, Ilonen J, Simell O, Knip M, Hyöty H. Analysis of pancreas tissue in a child positive for islet cell antibodies. Diabetologia 2008 Oct;51:1796-1802. doi: 10.1007/s00125-008-1107-8.

81. Näntö-Salonen K, Kupila A, Simell S, Siljander H, Salonsaari T, Hekkala A, Korhonen S, Erkkola R, Sipilä JI, Haavisto L, Siltala M, Tuominen J, Hakalax J, Hyöty H, Ilonen J, Veijola R, Simell T, Knip M, Simell O. Nasal insulin to prevent type 1 diabetes in children with HLA genotypes and autoantibodies conferring increased risk of disease: a double-blind, randomised controlled trial. Lancet 2008 Nov;372:1746-1755. doi: 10.1016/S0140-6736(08)61309-4.

82. Tuokkola J, Kaila M, Pietinen P, Simell O, Knip M, Virtanen SM. Agreement between parental reports and patient records in food allergies among infants and young children in Finland. J Eval Clin Pract 2008 Dec;14:984-989. doi: 10.1111/j.1365-2753.2007.00922.x.

83. Orešič M, Simell S, Sysi-Aho, M, Näntö-Salonen K, Seppänen-Laakso T, Parikka V Katajamaa M, Hekkala A, Mattila I, Keskinen P, Yetukuri L, Reinikainen A, Lähde J, Suortti T, Hakalax J, Simell T, Hyöty H, Veijola R, Ilonen J, Lahesmaa R, Knip M, Simell O. Dysregulation of lipid and amino acid metabolism precedes islet autoimmunity in children who later progress to type 1 diabetes. J Exp Med, 2008 Dec;205:2975-2984. doi: 10.1084/jem.20081800.

84. Uusitalo L, Uusitalo U, Ovaskainen M-L, Niinistö S, Kronberg-Kippilä C, Marjamäki L, Ahonen S, Kenward MG, Knip M, Veijola R, Virtanen SM. Sociodemographic and lifestyle characteristics are associated with antioxidant intake and the consumption of their dietary sources during pregnancy. Public Health Nutr 2008 Dec;11:1379-1388. doi: 10.1017/S1368980008003522.

2009

85. Oikarinen S, Tauriainen S, Viskari H, Simell O, Knip M, Virtanen S, Hyöty H. PCR inhibition in stool samples in relation to age of infants. J Clin Virol 2009 Mar;44:211-214. doi: 10.1016/j.jcv.2008.12.017.

86. Erkkola M, Kronberg-Kippilä C, Kyttälä P, Lehtisalo J, Reinivuo H, Tapanainen H, Veijola R, Knip M, Ovaskainen M-L, Virtanen SM. Sucrose in the diet of 3-year-old Finnish children: sources, determinants and impact on food and nutrient intake. Br J Nutr 2009 Apr;101:1209-1217. doi: 10.1017/S0007114508057619.

87. Erkkola M, Kaila M, Nwaru BI, Kronberg-Kippilä C, Ahonen S, Nevalainen J, Veijola R, Pekkanen J, Ilonen J, Simell O, Knip M, Virtanen SM. Maternal vitamin D intake during pregnancy is inversely associated with asthma and allergic rhinitis in 5-year-old children. Clin Exp Allergy 2009 Jun;39:875-882. doi: 10.1111/j.1365-2222.2009.03234.x.

88. Douroudis K, Laine A-P, Heinonen M, Hermann R, Lipponen K, Veijola R, Simell O, Knip M, Uibo R, Ilonen J, Kisand K. Association of CTLA4 but not ICOS polymorphisms with Type 1 Diabetes in two populations with different disease rates. Hum Immunol 2009 Jul;70:536-539. doi: 10.1016/j.humimm.2009.04.023.

89. Ovaskainen M-L, Nevalainen J, Uusitalo L, Tuokkola JJ, Arkkola T, Kronberg-Kippilä C, Veijola R, Knip M, Virtanen SM. Some similarities in dietary clusters of pre-school children and their mothers. Br J Nutr 2009 Aug;102:443-452. doi: 10.1017/S0007114508191218.

90. Lempainen J, Vaarala O, Mäkelä M, Veijola R, Simell O, Knip M, Hermann R, Ilonen J. Interplay between PTPN22 C1858T polymorphism and cow´s milk formula exposure in type 1 diabetes. J Autoimmun 2009 Sep;33:155-164. doi: 10.1016/j.jaut.2009.04.003.

91. Siljander H, Härkönen T, Hermann R, Simell S, Hekkala A, Salonsaari R-T, Simell T, Simell O, Ilonen J, Veijola R, Knip M. Role of insulin autoantibody affinity as a predictive marker for type 1 diabetes in young children with HLA-conferred disease susceptibility. Diabetes Metab Res Rev 2009 Oct;25:615-622. doi: 10.1002/dmrr.998.

92. Siljander HTA, Simell S, Hekkala A, Lähde J, Simell T, Vähäsalo P, Veijola R, Ilonen J, Simell O, Knip M. Predictive Characteristics of Diabetes-Associated Autoantibodies Among Children With HLA-Conferred Disease Susceptibility in the General Population. Diabetes 2009 Dec;58:2835-2842. doi: 10.2337/db08-1305.

93. Goldstein E, Hermann R, Renfors TJ, Näntö-Salonen KM, Korhonen T, Kärkkäinen M, Veijola RK, Knip M, Simell TT, Simell OG. From Genetic Risk Awareness to Overt Type 1 Diabetes: Parental stress in a placebo-controlled prevention trial. Diabetes Care 2009 Dec;32:2181-2183. doi: 10.2337/dc09-0423.

94. Uusitalo U, Arkkola T, Ovaskainen M-L, Kronberg-Kippilä C, Kenward MG, Veijola R, Simell O, Knip M, Virtanen SM. Unhealthy dietary patterns are associated with weight gain during pregnancy among Finnish women. Public Health Nutr 2009 Dec;12:2392-2399. doi: 10.1017/S136898000900528X.

2010

95. Virtanen SM, Kaila M, Pekkanen J, Kenward MG, Uusitalo U, Pietinen P, Kronberg-Kippilä C, Hakulinen T, Simell O, Ilonen J, Veijola R, Knip M. Early introduction of oats associated with decreased risk of persistent asthma and early introduction of fish with decreased risk of allergic rhinitis. Brit J Nutr 2010 Jan;103:266-273. doi: 10.1017/S0007114509991541.

96. Nwaru BI, Erkkola M, Ahonen S, Kaila M, Haapala A-M, Kronberg-Kippilä C, Salmelin R, Veijola R, Ilonen J, Simell O, Knip M, Virtanen SM. Age at the Introduction of Solid Foods During the First Year and Allergic Sensitization at Age 5 Y. Pediatrics 2010 Jan;125:50-59. doi: 10.1542/peds.2009-0813.

97. Jermendy A, Szatmári I, Laine AP, Lukács K, Horváth KH, Körner A, Madácsy L, Veijola R, Simell O, Knip M, Ilonen J, Hermann R. The Finnish Paediatric Diabetes Registry, The HUNT1DGENES program. The interferon-induced helicase (IFIH1) Ala946Thr polymorphism is associated with type 1 diabetes both in the high incidence Finnish and the medium incidence Hungarian population. Diabetologia 2010 Jan;53:98-102. doi: 10.1007/s00125-009-1561-y.

98. Nwaru BI, Ahonen S, Kaila M, Erkkola M, Haapala A-M, Kronberg-Kippilä C, Veijola R, Ilonen J, Simell O, Knip M, Virtanen SM. Maternal diet during pregnancy and allergic sensitization in the offspring by 5 yrs of age: a prospective cohort study. Pediatr Allergy Immunol 2010 Feb;21:29-37. doi: 10.1111/j.1399-3038.2009.00949.x.

99. Simell S, Hoppu S, Simell T, Ståhlberg M-R, Viander M, Routi T, Simell V, Veijola R, Ilonen J, Hyöty H, Knip M, Simell O. Age at Development of Type 1 Diabetes and Celiac Disease-Associated Antibodies and Clinical Disease in Genetically Susceptible Children Observed From Birth. Diabetes Care 2010 Apr;33:774-779. doi: 10.2337/dc09-1217.

100. Hekkala A, Reunanen A, Koski M, Knip M, Veijola R; Finnish Pediatric Diabetes Register. Age-Related Differences in the Frequency of Ketoacidosis at Diagnosis of Type 1 Diabetes in Children and Adolescents. Diabetes Care 2010 Apr;33:1500-2. doi: 10.2337/dc09-2344.

101. Erkkola M, Salmenhaara M, Kronberg-Kippilä C, Ahonen S, Arkkola T, Uusitalo L, Pietinen P, Veijola R, Knip M, Virtanen SM. Determinants of breast-feeding in a Finnish birth cohort. Public Health Nutr 2010 Apr;13:504-513. doi: 10.1017/S1368980009991777.

102. Kyttälä P, Erkkola M, Kronberg-Kippilä C, Tapanainen H, Veijola R, Simell O, Knip M, Virtanen SM. Food consumption and nutrient intake in Finnish 1-6-year-old children. Pub Health Nutr 2010 Jun;13:947-956. doi: 10.1017/S136898001000114X.

103. Lehtisalo J, Erkkola M, Tapanainen H, Kronberg-Kippilä C, Veijola R, Knip M, Virtanen SM. Food consumption and nutrient intake in day care and at home in 3-year-old Finnish children. Publ Health Nutr 2010 Jun;13:957-964. doi: 10.1017/S1368980010001151.

104. Prasad M, Lumia M, Erkkola M, Tapanainen H, Kronberg-Kippilä C, Tuokkola J, Uusitalo U, Simell O, Veijola R, Knip M, Ovaskainen M-L,Virtanen SM. Diet composition of pregnant Finnish women: changes over time and across seasons. Publ Health Nutr 2010 Jun;13:939-946. doi: 10.1017/S1368980010001138.

105. Elo LL, Mykkänen J, Nikula T, Järvenpää H, Simell S, Aittokallio T, Hyöty H, Ilonen J, Veijola R, Simell T, Knip M, Simell O, Lahesmaa R. Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling. J Autoimm 2010 Aug;35:70-76. doi: 10.1016/j.jaut.2010.03.001.

106. Erkkola M, Kyttälä P, Kronberg-Kippilä C, Ovaskainen M-L, Tapanainen H, Veijola R, Simell O, Knip M, Virtanen SM. Alle kouluikäisten lasten ruoankäyttö ja ravinnonsaanti. (In Finnish with English summary: The healthier future resides in family meals; The Diet of Finnish Preschoolers). Suomen lääkärilehti (Finnish Medical Journal) 2010 Aug;65:2665-2673. doi: NA.

107. Marjamäki L, Niinistö S, Kenward MG, Uusitalo L, Uusitalo U, Ovaskainen M-L, Kronberg-Kippilä C, Simell O, Veijola R, Ilonen J, Knip M, Virtanen SM. Maternal intake of vitamin D during pregnancy and risk of advanced beta cell autoimmunity and type 1 diabetes in offspring. Diabetologia 2010 Aug;53:1599-1607. doi: 10.1007/s00125-010-1734-8.

108. Tuokkola J, Luukkainen P, Kaila M, Tapanainen H, Klaukka T, Veijola R, Simell O, Knip M, Virtanen SM. Validation of a questionnaire on cow’s milk allergy: parental reports and physicians’ diagnosis. Acta Paediatr 2010 Aug;99:1273-1275. doi: 10.1111/j.1651-2227.2010.01772.x.

109. Virtanen SM, Niinistö S. Nevalainen J, Salminen I, Takkinen H-M, Kääriä S, Uusitalo L, Alfthan G, Kenward MG, Veijola R, Simell O, Ilonen J, Knip M. Serum fatty acids and risk of advanced β-cell autoimmunity: a nested case-control study among children with HLA-conferred susceptibility to type 1 diabetes. Eur J Clin Nutr 2010 Aug;64:792-799. doi: 10.1038/ejcn.2010.75.

110. Tuokkola J, Kaila M, Kronberg-Kippilä C, Sinkko HK Klaukka T, Pietinen P, Veijola R, Simell O, Ilonen J, Knip M, Virtanen SM. Cow´s milk allergy in children: adherence to a therapeutic elimination diet and reintroduction of milk into the diet. Eur J Clin Nutr 2010 Oct;64:1080-1085. doi: 10.1038/ejcn.2010.132.

111. Lipponen K, Gombos Z, Kiviniemi M, Siljander H, Lempainen J, Hermann R, Veijola R, Simell O, Knip M, Ilonen J. Effect of HLA Class I and Class II Alleles on Progression From Autoantibody Positivity to Overt Type 1 Diabetes in Children With Risk-Associated Class II Genotypes. Diabetes 2010 Dec;59:3253-3256. doi: 10.2337/db10-0167.

112. Salmenhaara M, Uusitalo L, Uusitalo U, Kronberg-Kippilä C, Sinkko H, Ahonen S, Veijola R, Knip M, Kaila M, Virtanen SM. Diet and weight gain characteristics of pregnant women with gestational diabetes. Eur J Clin Nutr 2010 Dec;64:1433-1440. doi: 10.1038/ejcn.2010.167.

2011

113. Oikarinen S, Martiskainen M, Tauriainen S, Huhtala H, Ilonen J, Veijola R, Simell O, Knip M, Hyöty H. Enterovirus RNA in Blood is Linked to the Development of Type 1 Diabetes. Diabetes 2011 Jan;60:276-279. doi: 10.2337/db10-0186.

114. Giongo A, Gano KA, Crabb DB, Mukherjee N, Novelo LL, Casella G, Drew JC, Ilonen J, Knip M, Hyöty H, Veijola R, Simell T, Simell O, Neu J, Wasserfall CH, Schatz D, Atkinson MA, Triplett EW. Toward defining the autoimmune microbiome for type 1 diabetes. ISME J 2011 Jan;5:82-91. doi: 10.1038/ismej.2010.92.

115. Virtanen SM, Uusitalo L, Kenward MG, Nevalainen J, Uusitalo U, Kronberg-Kippilä C, Ovaskainen M-L, Arkkola T, Niinistö S, Hakulinen T, Ahonen S, Simell O, Ilonen J, Veijola R, Knip M. Maternal food consumption during pregnancy and risk of advance β-cell autoimmunity in the offspring. Pediatr Diabetes 2011 Mar;12:95-99. doi: 10.1111/j.1399-5448.2010.00668.x.

116. Prasad M, Takkinen H-M, Nevalainen J, Ovaskainen M-L, Alfthan G, Uusitalo L, Kenward MG, Veijola R, Simell O, Ilonen J, Knip M, SM. Are serum α- and β-carotene concentrations associated with the development of advanced beta-cell autoimmunity in children with increased genetic susceptibility to type 1 diabetes? Diabetes Metab 2011Apr;37:162-167. doi: 10.1016/j.diabet.2010.10.002.

117. Forbes JM, Söderlund J, Yap FYT, Knip M, Andrikopoulos S, Ilonen J, Simell O, Veijola R, Sourris KC, Coughlan MT, Forsblom C, Slattery R, Grey ST, Wessman M, Yamamoto H, Bierhaus A, Cooper ME, Groop P-H. Receptor for advanced glycation end-products (RAGE) provides a link between genetic susceptibility and environmental factors in type 1 diabetes. Diabetologia 2011 May;54:1032-1042. doi: 10.1007/s00125-011-2058-z.

118. Forbes JM, Söderlund J, Yap FYT, Knip M, Andrikopoulos S, Ilonen J, Simell O, Veijola R, Sourris KC, Coughlan MT, Forsblom C, Slattery R, Grey ST, Wessman M, Yamamoto H, Bierhaus A, Cooper ME, Groop P-H. Erratum to: Receptor for advanced glycation endproducts (RAGE) provides a link between genetic susceptibility and environmental factors in type 1 diabetes. Diabetologia 2011 May;54:1586-1587. doi: NA.

119. Nwaru BI, Erkkola M, Ahonen S, Kaila M, Lumia M, Prasad M, Haapala AM, Kronberg-Kippilä C, Veijola R, Ilonen J, Simell O, Knip M, Virtanen SM. Maternal diet during lactation and allergic sensitization in the offspring at age of 5. Pediatr Allergy Immunol 2011 May;22:334-341. doi: 10.1111/j.1399-3038.2010.01114.x.

120. Ryhänen SJ, Härkönen T, Siljander H, Näntö-Salonen K, Simell T, Hyöty H, Ilonen J, Veijola R, Simell O, Knip M. Impact of Intranasal Insulin on Insulin Antibody Affinity and Isotypes in Young Children With HLA-Conferred Susceptibility to Type 1 Diabetes. Diabetes Care 2011 Jun;34:1383-1388. doi: 10.2337/dc10-1449.

121. Erkkola M, Kyttälä P, Takkinen H-M, Kronberg-Kippilä C, Nevalainen J, Simell O, Ilonen J, Veijola R, Knip M, Virtanen SM. Nutrient intake variability and number of days needed to assess intake in preschool children. Br J Nutr 2011 Jul;106:130-140. doi: 10.1017/S0007114510005167.

122. Arkkola T, Kautiainen S, Takkinen H-M, Kenward, MG, Nevalainen J, Uusitalo U, Simell O,  Ilonen J, Knip M, Veijola R, Virtanen SM. Relationship of maternal weight status and weight gain rate during pregnancy to the development of advanced beta cell autoimmunity in the offspring: a prospective birth cohort study. Pediatr Diabetes 2011 Aug;12:478-484. doi: 10.1111/j.1399-5448.2010.00703.x.

123. Virtanen SM, Takkinen H-M, Nevalainen J, Kronberg-Kippilä C, Salmenhaara M, Uusitalo L, Kenward MG, Erkkola M, Veijola R, Simell O, Ilonen J, Knip M. Early introduction of root vegetables in infancy associated with advanced β-cell autoimmunity in young children with human leukocyte antigen-conferred susceptibility to Type 1 diabetes. Diabetic Med 2011 Aug;28:965-971. doi: 10.1111/j.1464-5491.2011.03294.x.

124. Nwaru BI, Erkkola M, Ahonen S, Kaila M, Kronerg-Kippilä C, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. Intake of antioxidants during pregnancy and the risk of allergies and asthma in the offspring. Eur J Clin Nutr 2011 Aug;65:937-943. doi: 10.1038/ejcn.2011.67.

125. Brown CT, Davis-Richardson AG, Giongo A, Crabb DB, Mukherjee N, Casella G, Drew JC, Ilonen J, Knip M, Hyöty H, Veijola R, Simell T, Simell O, Neu J, Wasserfall CH, Schatz D, Atkinson MA, Triplett EW. Gut Microbiome Metagenomics Analysis Suggests a Functional Model for the Development of Autoimmunity for Type 1 Diabetes. PLoS ONE 2011 Oct;6:e25792. doi: 10.1371/journal.pone.0025792.

126. Nwaru BI, Lumia M, Kaila M, Luukkainen P, Tapanainen H, Erkkola M, Ahonen S, Pekkanen J, Klaukka T, Veijola R, Simell O, Knip M, Virtanen SM. Validation of the Finnish ISAAC questionnaire on asthma against anti-asthmatic medication reimbursement database in 5-year-old children. Clin Resp J 2011 Oct;5:211-218. doi: 10.1111/j.1752-699X.2010.00222.x.

127. Sysi-Aho M, Ermolov A, Gopalacharyulu PV, Tripathi A, Seppänen-Laakso T, Maukonen J, Mattila I, Ruohonen ST, Vähätalo L, Yetukuri L, Härkönen T, Lindfors E, Nikkilä J, Ilonen J, Simell O, Saarela M, Knip M, Kaski S, Savontaus E, Orešič M. Metabolic Regulation in Progression to Autoimmune Disease. PLoS Comput Biol 2011 Oct;7:e1002257. doi: 10.1371/journal.pcbi.1002257.

128. Seppälä E, Viskari H, Hoppu S, Honkanen H, Huhtala H, Simell O, Ilonen J, Knip M, Hyöty H. Viral interference induced by live attenuated virus vaccine (OPV) can prevent otitis media. Vaccine 2011 Nov;29:8615-8618. doi: 10.1016/j.vaccine.2011.09.015.

129. Lumia M, Luukkainen P, Tapanainen H, Kaila M, Erkkola M, Uusitalo L, Niinistö S, Kenward MG, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. Dietary fatty acid composition during pregnancy and the risk of asthma in the offspring. Pediatr Allergy Immunol 2011Dec;22:827-835. doi: 10.1111/j.1399-3038.2011.01202.x.

2012

130. Virtanen SM, Nevalainen J, Kronberg-Kippilä C, Ahonen S, Tapanainen H, Uusitalo L, Takkinen H-M, Niinistö S, Ovaskainen M-L, Kenward MG, Veijola R, Ilonen J, Simell O, Knip M. Food consumption and advanced ß cell autoimmunity in young children with HLA-conferred susceptibility to type 1 diabetes: a nested case-control design. Am J Clin Nutr 2012 Feb;95:471-478. doi: 10.3945/ajcn.111.018879.

131. Lempainen J, Tauriainen S, Vaarala O, Mäkelä M, Honkanen H, Marttila J, Veijola R, Simell O, Hyöty H, Knip M, Ilonen J. Interaction of enterovirus infection and cow´s milk-based formula nutrition in type 1 diabetes-associated autoimmunity. Diabetes Metab Res Rev 2012 Feb;28:177-185. doi: 10.1002/dmrr.1294.

132. Meriluoto M, Hedman L, Tanner L, Simell V, Mäkinen M, Simell S, Mykkänen J, Korpelainen J, Ruuskanen O, Ilonen J, Knip M, Simell O, Hedman K, Söderlund-Venermo M. Association of Human Bocavirus 1Infection with Respiratory Disease in Childhood Follow-up Study, Finland.Emerg Infect Dis 2012 Feb:18:264-271. doi:10.3201/eid1802.111293.

133. Öling V, Reijonen H, Simell O, Knip M, Ilonen J. Autoantigen-specific memory CD4+ T cells are prevalent early in progression to Type 1 diabetes. Cell Immunol 2012 Feb;273;133-139. doi: 10.1016/j.cellimm.2011.12.008.

134. Erkkola M, Nwaru BI, Kaila M, Kronberg-Kippilä C, Ilonen J, Simell O, Veijola R, Knip M, Virtanen SM. Risk of asthma and allergic outcomes in the offspring in relation to maternal food consumption during pregnancy: A Finnish birth cohort study. Pediatr Allergy Immunol 2012 Mar;23;186-194. doi: 10.1111/j.1399-3038.2012.01272.x.

135. Parikka V, Näntö-Salonen K, Saarinen M, Simell T, Ilonen J, Hyöty H, Veijola R, Knip M, Simell O. Early seroconversion and rapidly increasing autoantibody concentrations predict prepubertal manifestation of type 1 diabetes in children at genetic risk. Diabetologia 2012 Mar;55:1926-1936. doi: 10.1007/s00125-012-2523-3.

136. Lempainen J, Hermann R, Veijola R, Simell O, Knip M, Ilonen J. Effect of the PTPN22 and INS Risk Genotypes on the Progression to Clinical Type 1 Diabetes After the Initiation of ß-Cell Autoimmunity. Diabetes 2012 Apr;61:963-966. doi: 10.2337/db11-0386.

137. Kolehmainen P, Oikarinen S, Koskiniemi M, Simell O, Ilonen J, Knip M, Hyöty H, Tauriainen S. Human parechoviruses are frequently detected in stool of healthy Finnish children. J Clin Virol 2012 Jun;54:156-161. doi:10.1016/j.jcv.2012.02.006.

138. Viskari H, Knip M, Tauriainen S, Huhtala H, Veijola R, Ilonen J, Simell O, Surcel H-M, Hyöty H. Maternal Enterovirus Infection as a Risk Factor for Type 1 Diabetes in the Exposed Offspring. Diabetes Care 2012 Jun;35:1328-1332. doi: 10.2337/dc11-2389.

139. Lumia M, Luukkainen P, Kaila M, Tapanainen H, Takkinen H-M, Prasad M, Niinistö S, Nwaru BI, Kenward MG, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. Maternal dietary fat intake during lactation and the risk of asthma in the offspring. Acta Pædiatr 2012 Aug;101:e337-e343. doi: 10.1111/j.1651-2227.2012.02718.x.

140. Nwaru BI, Erkkola M, Lumia M, Kronberg-Kippilä C, Ahonen S, Kaila M, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. Maternal intake of fatty acids during pregnancy and allergies in the offspring. Br J Nutr 2012 Aug;108:720-732. doi: 10.1017/S0007114511005940.

141. Karjalainen AK, Hirvonen T, Kiviranta H, Sinkko H, Kronberg-Kippilä C, Virtanen SM, Hallikainen A, Leino O, Knip M, Veijola R, Simell O, Tuomisto JT. Long-term daily intake estimates of polychlorinated dibenzo-p-dioxins and furans, polychlorinated biphenyls and polybrominated diphenylethers from food in Finnish children: risk assessment implications. Food Addit Contam: Part A 2012 Sep;29:1475-1488. doi: 10.1080/19440049.2012.694373.

2013

142. Nwaru BI, Takkinen H-M, Niemelä O, Kaila M, Erkkola M, Ahonen S, Haapala AM, Kenward MG, Pekkanen J, Lahesmaa R, Kere J, Simell O, Veijola R, Ilonen J, Hyöty H, Knip M, Virtanen SM. Timing of infant feeding in relation to childhood asthma and allergic diseases. J Allergy Clin Immunol 2013 Jan;131:78-86. doi: 10.1016/j.jaci.2012.10.028.

143. Erkkola M, Salmenhaara M, Nwaru BI, Uusitalo L, Kronberg-Kippilä C, Ahonen S, Veijola R, Knip M, Virtanen SM. Sociodemographic determinants of early weaning: a Finnish birth cohort study in infants with human leucocyte antigen-conferred susceptibility to type 1 diabetes. Public Health Nutr 2013 Feb;16:296-304. doi: 10.1017/S1368980012002595.

144. Honkanen H, Oikarinen S, Peltonen P, Simell O, Ilonen J, Veijola R, Knip M, Hyöty H. Human rhinoviruses including group C are common in stool samples of young Finnish children. J Clin Virol 2013 Mar;56:250-254. doi: 10.1016/j.jcv.2012.11.020.

145. Honkanen H, Oikarinen S, Pakkanen O, Ruokoranta T, Pulkki MM, Laitinen OH, Tauriainen S, Korpela S, Lappalainen M, Vuorinen T, Haapala A-M, Veijola R, Simell O, Ilonen J, Knip M, Hyöty H. Human enterovirus 71 strains in the background population and in hospital patients in Finland. J Clin Virol 2013 Apr;56:348-353. doi: 10.1016/j.jcv.2012.11.018.

146. Karjalainen AK, Hallikainen A, Hirvonen T, Kiviranta H, Knip M, Kronberg-Kippilä C, Leino O, Simell O, Sinkko H, Tuomisto JT, Veijola R, Venäläinen E-R, Virtanen SM. Estimated intake levels for Finnish children of methylmercury from fish. Food Chem Toxicol 2013 Apr;54:70-77. doi: 10.1016/j.fct.2012.02.074.

147. Nwaru BI, Takkinen H-M, Niemelä O, Kaila M, Erkkola M, Ahonen S, Tuomi H, Haapala A-M, Kenward MG, Pekkanen J, Lahesmaa R, Kere J, Simell O, Veijola R, Ilonen J, Hyöty H, Knip M, Virtanen SM. Introduction of complementary foods in infancy and atopic sensitization at the age of 5 years: timing and food diversity in a Finnish birth cohort. Allergy 2013 Apr;68:507-516. doi: 10.1111/all.12118.

148. Korhonen L, Kondrashova A, Tauriainen S, Haapala AM, Huhtala H, Ilonen J, Simell O, Knip M, Lönnrot M, Hyöty H. Enterovirus infections in early childhood and the risk of atopic disease – a nested case-control study. Clin Exp Allergy 2013 Jun;43:625-632. doi: 10.1111/cea.12068.

149. Ziegler AG, Rewers M, Simell O, Simell T, Lempainen J, Steck A, Winkler C, Ilonen J, Veijola R, Knip M, Bonifacio E, Eisenbarth GS. Seroconversion to Multiple Islet Autoantibodies and Risk of Progression to Diabetes in Children. JAMA 2013 Jun;309:2473-2479. doi: 10.1001/jama.2013.6285.

150. Uusitalo L, Nevalainen J, Salminen I, Ovaskainen M-L, Kronberg-Kippilä C, Ahonen S, Niinistö S, Alfthan G, Simell O, Ilonen J, Veijola R, Knip M, Virtanen SM. Fatty acids in serum and diet – a canonical correlation analysis among toddlers. Maternal & Child Nutrition 2013 Jul;9:381-395. doi: 10.1111/j.1740-8709.2011.00374.x.

151. Lähdeaho M-L, Ukkola O, Jokela M, Huhtala H, Knip M, Kesäniemi YA, Kuusela A-L. Peptide hormones in infants with feeding disorders. Scand J Clin Lab Invest 2013 Aug;73:387-391. doi: 10.3109/00365513.2013.786122.

152. Kolehmainen P, Koskiniemi M, Oikarinen S, Veijola R, Simell O, Ilonen J, Knip M, Hyöty H, Tauriainen S. Human Parechovirus and the Risk of Type 1 Diabetes. J Med Virol 2013 Sep;85:1619-1623. doi: 10.1002/jmv.23659.

153. Orešič M, Gopalacharyulu P, Mykkänen J, Lietzen N, Mäkinen M, Nygren H, Simell S, Simell V, Hyöty H, Veijola R, Ilonen J, Sysi-Aho M, Knip M, Hyötyläinen T, Simell O. Cord Serum Lipidome in Prediction of Islet Autoimmunity and Type 1 Diabetes. Diabetes 2013 Sep;62:3268-3274. doi: 10.2337/db13-0159.

154. Siljander HT, Hermann R, Hekkala A, Lähde J, Tanner L, Keskinen P, Ilonen J, Simell O, Veijola R, Knip M. Insulin secretion and sensitivity in the prediction of type 1 diabetes in children with advanced b-cell autoimmunity. Eur J Endocrinol 2013 Sep;169:479-485. doi: 10.1530/EJE-13-0206.

155. Simonen-Tikka, M-L, Klemola P, Suomenrinne S, Kaijalainen S, Söderström D, Savolainen-Kopra C, Näntö-Salonen K, Ilonen J, Simell T, Simell O, Roivainen M. Virus Infections Among Young Children-the First Year of the Indis Study. J Med Virol, 2013 Sep;85:1678-1684. doi: 10.1002/jmv.23625.

156. Westerhuis B, Kolehmainen P, Benschop K, Nurminen N, Koen G, Koskiniemi M, Simell O, Knip M, Hyöty H, Wolthers K, Tauriainen S. Human parechovirus seroprevalence in Finland and the Netherlands. J Clin Virol 2013 Sep;58:211-215. doi: 10.1016/j.jcv.2013.06.036.

157. Ilonen J, Hammais A, Laine AP, Lempainen J, Vaarala O, Veijola R, Simell O, Knip M. Patterns of ß-Cell Autoantibody Appearance and Genetic Associations During the First Years of Life. Diabetes 2013 Oct;62:3636-3640. doi: 10.2337/db13-0300.

2014

158. Mikk M-L, Kiviniemi M, Laine A-P, Härkönen T, Veijola R, Simell O, Knip M, Ilonen J, the Finnish Paediatric Diabetes Register. The HLA-B*39 allele increases type 1 diabetes risk conferred by HLA-DRB1*04:04-DQB1*03:02 and HLA-DRB1*08-DQB1*04 class II haplotypes. Hum Immunol 2014 Jan;75:65-70. doi: 10.1016/j.humimm.2013.09.008.

159. Oikarinen S, Tauriainen S, Hober D, Lucas B, Vazeou A, Sioofy-Khojine A, Bozas, E, Muir P, Honkanen H, Ilonen J, Knip M, Keskinen P, Saha M-T, Huhtala H, Stanway G, Bartsocas CS, Ludvigsson J, Taylor K, Hyöty H, VirDiab Study Group. Virus Antibody Survey in Different European Populations Indicates Risk Association Between Coxsackievirus B1 and Type 1 Diabetes. Diabetes 2014 Feb;63:655-662. doi: 10.2337/db13-0620.

160. Laitinen OH, Honkanen H, Pakkanen O, Oikarinen S, Hankaniemi MM, Huhtala H, Ruokoranta T, Lecouturier V, André P, Harju R, Virtanen SM, Lehtonen J, Almond JW, Simell T, Simell O, Ilonen J, Veijola R, Knip M, Hyöty H. Coxsackievirus B1 is Associated With Induction of b-Cell Autoimmunity That Portends Type 1 Diabetes. Diabetes 2014 Feb;63;446-455. doi: 10.2337/db13-0619.

161. Talja I, Kubo A-L, Veijola R, Knip M, Simell O, Ilonen J, Vähä-Mäkilä M, Sepp E, Mikelsaar M, Utt M, Uibo R. Antibodies to Lactobacilli and Bifidobacteria in Young Children with Different Propensity to Develop Islet Autoimmunity. J Immunol Res 2014 Mar;2014:325938. doi: 10.1155/2014/325938.

162. Niinistö S, Takkinen H-M, Uusitalo L, Rautanen J, Nevalainen J, Kenward MG, Lumia M, Simell O, Veijola R, Ilonen J, Knip M, Virtanen SM. Maternal dietary fatty acid intake during pregnancy and the risk of preclinical and clinical type 1 diabetes in the offspring. Br J Nutr 2014 Mar;111:895-903. doi: 10.1017/S0007114513003073.

163. Nwaru BI, Takkinen H-M, Kaila M, Erkkola M, Ahonen S, Pekkanen JP, Simell O, Veijola R, Ilonen J, Hyöty H, Knip M, Virtanen SM. Food diversity in infancy and the risk of childhood asthma and allergies. J Allergy Clin Immunol 2014 Apr;133:1084-1091. doi: 10.1016/j.jaci.2013.12.1069.

164. Chen T, Tanner L, Simell V, Hedman L, Mäkinen M, Sadeghi M, Veijola R, Hyöty H, Ilonen J, Knip M, Toppari J, Simell O, Söderlund-Venermo M, Hedman K. Diagnostic Methods for and Clinical Picture of Polyomavirus Primary Infections in Children, Finland. Emerg Infect Dis 2014 Apr;20:689-692. doi: 10.3201/eid2004.131015.

165. Kallionpää H,Elo LL, Laajala, E, Mykkänen J, Ricaño-Ponce I, Vaarma M,Laajala TD,Hyöty H, Ilonen J, Veijola R, Simell T, Wijmenga C, Knip M, Lähdesmäki H, Simell O, Lahesmaa R. Innate Immune Activity is Detected Prior to Seroconversion in Children With HLA-Conferred Type 1 Diabetes Susceptibility. Diabetes 2014 Jul;63:2402-2414. doi: 10.2337/db13-1775.

166. Leonard MT, Davis-Richardson AG, Ardissone AN, Kemppainen KM, Drew JC, Ilonen J, Knip M, Simell O, Toppari J, Veijola R, Hyöty H, Triplett EW. The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei. Front Microbiol 2014 Jul;5:361. doi: 10.3389/fmicb.2014.00361.

167. Lumia M, Luukkainen P, Takkinen H-M, Kaila M, Nwaru BI, Nevalainen J, Salminen I, Uusitalo L, Niinistö S, Tuokkola J, Niemelä O, Haapala A-M, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. (Letter) Cow´s milk allergy and the association between fatty acids and childhood asthma risk. J Allergy Clin Immunol 2014 Aug;134:488-490. doi: 10.1016/j.jaci.2014.04.012.

168. Virtanen SM, Takkinen H-M, Nwaru BI, Kaila M, Ahonen S, Nevalainen J, Niinistö S, Siljander H, Simell O, Ilonen J, Hyöty H, Veijola R, Knip M. Microbial Exposure in Infancy and Subsequent Appearance of Type 1 Diabetes Mellitus-Associated Autoantibodies: A Cohort Study. JAMA Pediatr. 2014 Aug;168:755-763. doi: 10.1001/jamapediatrics.2014.296.

169. Mäkinen M, Simell V, Mykkänen J, Ilonen J, Veijola R, Hyöty H, Knip M, Simell O, Toppari J, Hermann R. An Increase in Serum 25-Hydroxyvitamin D Concentrations Preceded a Plateau in Type 1 Diabetes Incidence in Finnish Children. J Clin Endocrinol Metab 2014 Nov;99:E2353-E2356. doi: 10.1210/jc.2014-1455.

170. Kyttälä P, Erkkola M, Lehtinen-Jacks S, Ovaskainen M-L, Uusitalo L, Veijola R, Simell O, Knip M, Virtanen SM. Finnish Children Healthy Eating Index (FCHEI) and its associations with family and child characteristics in pre-school children. Public Health Nutr 2014 Nov;17:2519-2527. doi: 10.1017/S1368980013002772.

171. Davis-Richardson AG, Ardissone AN, Dias R, Simell V, Leonard MT, Kemppainen KM, Drew JC, Schatz D, Atkinson MA, Kolaczkowski B, Ilonen J, Knip M, Toppari J, Nurminen N, Hyöty H, Veijola R, Simell T, Mykkänen J, Simell O, Triplett EW. Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes. Front Microbiol 2014 Dec; 5:678. doi: 10.3389/fmicb.2014.00678.

2015

172. Van der Valk RJP, Kreiner-Møller E, Kooijman MN, Guxens M, Stergiakouli E, Sääf A, Bradfield JP, Geller F, Hayes MG, Cousminer DL, Körner A, Thiering E, Curtin JA, Myhre R, Huikari V, Joro R, Kerkhof M, Warrington NM, Pitkänen N, Ntalla I, Horikoshi M, Veijola R, Freathy RM, Teo Y-Y, Barton SJ, Evans DM, Kemp JP, St Pourcain B, Ring SM, Smith GD, Bergström A, Kull I, Hakonarson H, Mentch FD, Bisgaard H, Chawes B, Stokholm J, Waage J, Eriksen P, Sevelsted A, Melbye M, Early Genetics and Lifecourse Epidemiology (EAGLE) Consortium, van Duijn CM, Medina-Gomez C, Hofman A, de Jongste JC, Taal HR, Uitterlinden AG, Genetic Investigation of ANthropometric Traits (GIANT) Consortium, Armstrong LL, Eriksson J, Palotie A, Bustamante M, Estivill X, Gonzalez JR, Llop S, Kiess W, Mahajan A, Flexeder C, Tiesler CMT, Murray CS, Simpson A, Magnus P, Sengpiel V, Hartikainen A-L, Keinanen-Kiukaanniemi S, Lewin A, Da Silva Couto Alves A, Blakemore AI, Buxton JL, Kaakinen M, Rodriguez A, Sebert S, Vaarasmaki M, Lakka T, Lindi V, Gehring U, Postma DS, Ang W, Newnham JP, Lyytikäinen L-P, Pahkala K, Raitakari OT, Panoutsopoulou K, Zeggini E, Boomsma DI, Groen-Blokhuis M, Ilonen J, Franke L, Hirschhorn JN, Pers TH, Liang L, Huang J, Hocher B, Knip M, Saw S-M, Holloway JW, Melén E, Grant SFA, Feenstra B, Lowe WL, Widén E, Sergeyev E, Grallert H, Custovic A, Jacobsson B, Jarvelin M-R, Atalay M, Koppelman GH, Pennell CE, Niinikoski H, Dedoussis GV, Mccarthy MI, Frayling TM, Sunyer J, Timpson NJ, Rivadeneira F, Bønnelykke K, Jaddoe VWV for the Early Growth Genetics (EGG) Consortium. A novel common variant in DCST2 is associated with length in early life and height in adulthood. Hum Mol Genet 2015 Feb;24:1155-1168. doi: 10.1093/hmg/ddu510.

173. Acevedo N, Reinius LE, Vitezic M, Fortino V, Söderhäll C, Honkanen H, Veijola R, Simell O, Toppari J, Ilonen J, Knip M, Scheynius A, Hyöty H, Greco D, Kere J. Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human leukocytes. Clin Epigenet 2015 Mar;7:34. doi: 10.1186/s13148-015-0064-6.

174. Koskinen MK, Helminen O, Matomäki J, Aspholm S, Mykkänen J, Mäkinen M, Simell V, Vähä-Mäkilä M, Simell T, Ilonen J, Knip M, Veijola R, Toppari J, Simell OG. Reduced β-cell function in early preclinical type 1 diabetes. Eur J Endocrinol 2015 Mar;174:251–259. doi: 10.1530/EJE-15-0674.

175. Salonen KM, Ryhänen SJ, Forbes JM, Borg DJ, Härkönen T, Ilonen J, Simell O, Veijola R, Groop PH, Knip M. Decrease in Circulating Concentrations of Soluble Receptors for Advanced Glycation End Products at the Time of Seroconversion to Autoantibcoy Positivity in Children With Prediabetes. Diabetes Care 2015 Apr;38:665-670. doi: 10.2337/dc14-1186.

176. Hamari S, Kirveskoski T, Glumoff V, Kulmala P, Simell O, Knip M, Ilonen J, Veijola R. CD4+ T-cell proliferation responses to wheat polypeptide stimulation in children at different stages of type 1 diabetes autoimmunity. Pediatr Diabetes 2015 May;16:177-188. doi: 10.1111/pedi.12256.

177. Helminen O, Aspholm S, Pokka T, Hautakangas M-R, Haatanen N, Lempainen J, Ilonen J, Simell O, Knip M, Veijola R. HbA1c Predicts Time to Diagnosis of Type 1 Diabetes in Children at Risk. Diabetes 2015 May;64:1719-1727. doi: 10.2337/db14-0497.

178. Lammi A, Arikoski P, Simell S, Kinnunen T, Simell V, Paavanen-Huhtala S, Hinkkanen A, Veijola R, Knip M, Toppari J, Vaarala O, Simell O, Ilonen J. Antibodies to Deamidated Gliadin Peptide in Diagnosis of Celiac Disease in Children. J Pediatr Gastroenterol Nutr 2015 May;60:626-631. doi: 10.1097/MPG.0000000000000666.

179. Kramná L, Kolářova K, Oikarinen S, Pursiheimo J-P, Ilonen J, Simell O, Knip M, Veijola R, Hyöty H, Cinek O. Gut Virome Sequencing in Children With Early Islet Autoimmunity. Diabetes Care 2015 May;38:930-933. doi: 10.2337/dc14-2490.

180. Moulder R, Bhosale SD, Erkkilä T, Laajala E, Salmi J, Nguyen EV, Kallionpää H, Mykkänen J, Vähä-Mäkilä M, Hyöty H, Veijola R, Ilonen J, Simell T, Toppari J, Knip M, Goodlett DR, Lähdesmäki H, Simell O, Lahesmaa R. Serum Proteomes Distinguish Children Developing Type 1 Diabetes in a Cohort with HLA-Conferred Susceptibility. Diabetes 2015 Jun;64:2265-2278. doi: 10.2337/db14-0983.

181. Lempainen J, Laine A-P, Hammais A, Toppari J, Simell O, Veijola R, Knip M, Ilonen J. Non-HLA gene effects on the disease process of type 1 diabetes: From HLA susceptibility to overt disease. J Autoimmun 2015 Jul;61:45-53. doi: 10.1016/j.jaut.2015.05.005.

182. Helminen O, Aspholm S, Pokka T, Ilonen J, Simell O, Veijola R, Knip M. OGTT and random plasma glucose in the prediction of type 1 diabetes and time to diagnosis. Diabetologia 2015 Aug;58:1787-1796. doi: 10.1007/s00125-015-3621-9.

183. Niinistö S, Takkinen H-M, Uusitalo L, Rautanen J, Vainio N, Ahonen S, Nevalainen J, Kenward MG, Lumia M, Simell O, Veijola R, Ilonen J, Knip M, Virtanen SM. Maternal intake of fatty acids and their food sources during lactation and the risk of preclinical and clinical type 1 diabetes in the offspring. Acta Diabetol 2015 Aug;52:763-772. doi: 10.1007/s00592-014-0673-0.

184. Kantola K, Hedman L, Tanner L, Simell V, Mäkinen M, Partanen J, Sadeghi M, Veijola R, Knip M, Ilonen J, Hyöty H, Toppari J, Simell O, Hedman K, Söderlund-Venermo M. B-Cell Responses to Human Bocaviruses 1-4: New Insights from a Childhood Follow-Up Study. PLoS ONE 2015 Sep;10(9):e139096. doi: 10.1371/journal.pone.0139096.

185. Kondrashova A, Nurminen N, Patrikainen M, Huhtala H, Lehtonen J, Toppari J, Ilonen J, Simell OG, Veijola R, Knip M, Hyöty H. Influenza A virus antibodies show no association with pancreatic islet autoantibodies in children generally predisposed to type 1 diabetes. Diabetologia 2015 Nov;58:2592-2595. doi: 10.1007/s00125-015-3723-4.

186. Lumia M, Takkinen H-M, Luukkainen P, Kaila M, Lehtinen-Jacks S, Nwaru BI, Tuokkola J, Niemelä O, Haapala A-M, Ilonen J, Simell O, Knip M, Veijola R, Virtanen SM. Food consumption and risk of childhood asthma. Pediatr Allerg Immunol 2015 Dec; 26:789-96. doi: 10.1111/pai.12352.

187. Blazevic V, Malm M, Salminen M, Oikarinen S, Hyöty H, Veijola R, Vesikari T. Multiple consecutive norovirus infections in the first 2 years of life. Eur J Pediatr 2015 Dec;174:1679-1683. doi: 10.1007/s00431-015-2591-8.

2016

188. Mäkinen M, Mykkänen J, Koskinen M, Simell V, Veijola R, Hyöty H, Ilonen J, Knip M, Simell O, Toppari J. Serum 25-Hydroxyvitamin D Concentrations in Children Progressing to Autoimmunity and Clinical Type 1 Diabetes. J Clin Endocrinol Metab 2016 Feb;101:723-729. doi: 10.1210/jc.2015-3504.

189. Blazevic V, Malm M, Honkanen H, Knip M, Hyöty H, Vesikari T. Development and Maturation of Norovirus antibodies in Childhood. Microbes Infect 2016 Apr; 18:263-9. doi: 10.1016/j.micinf.2015.12.004.

190. Hamari S, Kirveskoski T, Glumoff V, Kulmala P, Simell O, Knip M, Veijola R. Analyses of regulatory CD4(+) CD25(+) FOXP3(+) T cells and observations from peripheral T cell subpopulation markers during the development of type 1 diabetes in children. Scand J Immunol. 2016 Apr;83:279-87. doi: 10.1111/sji.12418.

191. Tuokkola J, Luukkainen P, Tapanainen H, Kaila M, Vaarala O, Kenward MG, Virta LJ, Veijola R, Simell O, Ilonen J, Knip M, Virtanen SM. Maternal diet during pregnancy and lactation and cow’s milk allergy in offspring. Eur J Clin Nutr. 2016 May; 70:554-559. doi: 10.1038/ejcn.2015.223.

192. Tuokkola J, Luukkainen P, Kaila M, Takkinen HM, Niinistö S, Veijola R, Virta LJ, Knip M, Simell O, Ilonen J, Virtanen SM. Maternal dietary folate, folic acid and vitamin D intakes during pregnancy and lactation and the risk of cows’ milk allergy in the offspring. Br J Nutr 2016 Aug;116:710-718. doi: 10.1017/S0007114516002464.

193. Helminen O, Pokka T, Tossavainen P, Ilonen J, Knip M, Veijola R. Continuous glucose monitoring and HbA1c in the evaluation of glucose metabolism in children at high risk for type 1 diabetes mellitus. Diabetes Res Clin Pract. 2016 Oct;120:89-96. doi: 10.1016/j.diabres.2016.07.027.

194. Borges IC, Andrade DC, Cardoso MR, Toppari J, Vähä-Mäkilä M, Ilonen J, Knip M, Hyöty H, Veijola R, Simell O, Jartti T, Käyhty H, Ruuskanen O, Nascimento-Carvalho CM. Natural Development of Antibodies against Streptococcus pneumoniae, Haemophilus influenzae, and Moraxella catarrhalis Protein Antigens during the First 13 Years of Life. Clin Vaccine Immunol. 2016 Nov;23:878-883. doi: 10.1128/CVI.00341-16.

195. Seppälä E, Sillanpää S, Nurminen N, Huhtala H, Toppari J, Ilonen J, Veijola R, Knip M, Sipilä M, Laranne J, Oikarinen S, Hyöty H. Human enterovirus and rhinovirus infections are associated with otitis media in a prospective birth cohort study. J Clin Virol. 2016 Dec;85:1-6. doi: 10.1016/j.jcv.2016.10.010.

2017

196. Knip M, Selvenius J, Siljander H, Veijola R. Reclassification of asymptomatic beta cell autoimmunity: a critical perspective. Diabetologia 2017 Jan; 60:39-42. doi: 10.1007/s00125-016-4147-5.

197. Viisanen T, Ihantola EL, Näntö-Salonen K, Hyöty H, Nurminen N, Selvenius J, Juutilainen A, Moilanen L, Pihlajamäki J, Veijola R, Toppari J, Knip M, Ilonen J, Kinnunen T. Circulating CXCR5+PD-1+ICOS+ Follicular T Helper Cells Are Increased Close to the Diagnosis of Type 1 Diabetes in Children With Multiple Autoantibodies. Diabetes 2017 Feb; 66:437-447. doi: 10.2337/db16-0714.

198. Kantola K, Hedman L, Tanner L, Simell V, Mäkinen M, Partanen J, Sadeghi M, Veijola R, Knip M, Ilonen J, Hyöty H, Toppari J, Simell O, Hedman K, Söderlund-Venermo M. Correction: B-Cell Responses to Human Bocaviruses 1-4: New Insights from a Childhood Follow-Up Study. PLoS One 2017 Feb; 8;12:e0172078. doi: 10.1371/journal.pone.0172078. eCollection 2017.

199. Honkanen H, Oikarinen S, Nurminen N, Laitinen OH, Huhtala H, Lehtonen J, Ruokoranta T, Hankaniemi MM, Lecouturier V, Almond JW, Tauriainen S, Simell O, Ilonen J, Veijola R, Viskari H, Knip M, Hyöty H. Detection of enteroviruses in stools precedes islet autoimmunity by several months: possible evidence for slowly operating mechanisms in virus-induced autoimmunity. Diabetologia 2017 Mar; 60:424-431. doi: 10.1007/s00125-016-4177-z.

200. Hämäläinen N, Nwaru BI, Erlund I, Takkinen HM, Ahonen S, Toppari J, Ilonen J, Veijola R, Knip M, Kaila M, Virtanen SM. Serum carotenoid and tocopherol concentrations and risk of asthma in childhood: a nested case-control study. Clin Exp Allergy 2017 Mar; 47:401-409. doi: 10.1111/cea.12904.

201. Mikk ML, Heikkinen T, El-Amir MI, Kiviniemi M, Laine AP, Härkönen T, Veijola R, Toppari J, Knip M, Ilonen J; Finnish Paediatric Diabetes Register. The association of the HLA-A*24:02, B*39:01 and B*39:06 alleles with type 1 diabetes is restricted to specific HLA-DR/DQ haplotypes in Finns. HLA 2017 Apr; 89:215-224. doi: 10.1111/tan.12967.

202. Salonen KM, Ryhänen SJ, Forbes JM, Härkönen T, Ilonen J, Simell O, Veijola R, Groop PH, Knip M. A drop in the circulating concentrations of soluble receptor for advanced glycation end products is associated with seroconversion to autoantibody positivity but not with subsequent progression to clinical disease in children en route to type 1 diabetes. Diabetes Metab Res Rev 2017 May; 33(4). doi: 10.1002/dmrr.2872.

203. Tuokkola J, Luukkainen P, Nevalainen J, Ahonen S, Toppari J, Ilonen J, Veijola R, Knip M, Virtanen SM, Kaila M. Eliminating cows’ milk, but not wheat, barley or rye, increases the risk of growth deceleration and nutritional inadequacies. Acta Paediatr 2017 Jul; 106:1142-1149. doi: 10.1111/apa.13846.

204. Niinistö S, Takkinen HM, Erlund I, Ahonen S, Toppari J, Ilonen J, Veijola R, Knip M, Vaarala O, Virtanen SM. Fatty acid status in infancy is associated with the risk of type 1 diabetes-associated autoimmunity. Diabetologia. 2017 Jul; 60:1223-1233. doi: 10.1007/s00125-017-4280-9.

205. Pöllänen PM, Lempainen J, Laine AP, Toppari J, Veijola R, Vähäsalo P, Ilonen J, Siljander H, Knip M. Characterisation of rapid progressors to type 1 diabetes among children with HLA-conferred disease susceptibility. Diabetologia 2017 Jul; 60:1284-1293. doi: 10.1007/s00125-017-4258-7.

206. Hakola L, Takkinen HM, Niinistö S, Ahonen S, Erlund I, Rautanen J, Veijola R, Ilonen J, Toppari J, Knip M, Virtanen SM, Lehtinen-Jacks S. Maternal fatty acid intake during pregnancy and the development of childhood overweight: a birth cohort study. Pediatr Obes. 2017 Aug; 12:26-37. doi: 10.1111/ijpo.12170.Cinek.

207. Cinek O, Kramna L, Lin J, Oikarinen S, Kolarova K, Ilonen J, Simell O, Veijola R, Autio R, Hyöty H. Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children with islet autoimmunity and matched controls. Pediatr Diabetes 2017 Nov;18:588-598. doi: 10.1111/pedi.12468.

208. Nwaru BI, Hadkhale K, Hämäläinen N, Takkinen HM, Ahonen S, Ilonen J, Toppari J, Niemelä O, Haapala AM, Veijola R, Knip M, Virtanen SM. Vitamin D intake during the first 4 years and onset of asthma by age 5: A nested case-control study. Pediatr Allergy Immunol 2017 Nov; 28:641-648. doi: 10.1111/pai.12773.

2018

209. Viskari H, Oikarinen S, Hoppu S, Vuorinen T, Huhtala H, Toppari J, Veijola R, Ilonen J, Knip M, Hyöty H. Live attenuated enterovirus vaccine (OPV) is not associated with islet autoimmunity in children with genetic susceptibility to type 1 diabetes: prospective cohort study. Diabetologia 2018 Jan; 61:203-209. doi:10.1007/s00125-017-4410-4. Epub 2017 Sept 2.

210. Hakola L, Takkinen HM, Niinistö S, Ahonen S, Nevalainen J, Veijola R, Ilonen J, Toppari J, Knip M, Virtanen SM. Infant Feeding in Relation to the Risk of Advanced Islet Autoimmunity and Type 1 Diabetes in Children With Increased Genetic Susceptibility: A Cohort Study. Am J Epidemiol 2018 Jan;187:34-44. doi: 10.1093/aje/kwx191.

211. Lietzen N, An LTT, Jaakkola MK, Kallionpää H, Oikarinen S, Mykkänen J, Knip M, Veijola R, Ilonen J, Toppari J, Hyöty H, Lahesmaa R, Elo LL. Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes. Diabetologia 2018 Feb; 61:381-388. doi: 10.1007/s00125-017-4460-7. Epub 2017 Nov 8.

212. Ilonen J, Lempainen J, Hammais A, Laine AP, Härkönen T, Toppari J, Veijola R, Knip M; Finnish Pediatric Diabetes Register. Primary islet autoantibody at initial seroconversion and autoantibodies at diagnosis of type 1 diabetes as markers of disease heterogeneity. Pediatr Diabetes 2018 Mar; 19:284-292. doi: 10.1111/pedi.12545. Epub 2017 Jun 9.

213. Hekkala A, Ilonen J, Toppari J, Knip M, Veijola R. Ketoacidosis at diagnosis of type 1 diabetes: effect of prospective studies with newborn genetic screening and follow-up of risk children. Pediatric Diabetes 2018 Mar; 19: 314-319. doi: 10.1111/pedi.12541. Epub 2017 May 23.

214. Kondrashova A, Nurminen N, Lehtonen J, Hyöty M, Toppari J, Ilonen J, Veijola R, Knip M, Hyöty H. Exocrine pancreas function decreases during the progression of the beta-cell damaging process in young prediabetic children. Pediatr Diabetes 2018 May;19(3):398-402. doi: 10.1111/pedi.12592. Epub 2017 Oct 17.

215. Sioofy-Khojine AB, Lehtonen J, Nurminen N, Laitinen OH, Oikarinen S, Huhtala H, Pakkanen O, Ruokoranta T, Hankaniemi MM, Toppari J, Vähä-Mäkilä M, Ilonen J, Veijola R, Knip M, Hyöty H. Coxsackievirus B1 infections are associated with the initiation of insulin-driven autoimmunity that progresses to type 1 diabetes. Diabetologia 2018 May;61(5):1193-1202. doi: 10.1007/s00125-018-4561-y.

216. Lamichhane S, Ahonen L, Dyrlund TS, Kemppainen E, Siljander H, Hyöty H, Ilonen J, Toppari J, Veijola R, Hyötyläinen T, Knip M, Oresic M. Dynamics of Plasma Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes – Type 1 Diabetes Prediction and Prevention Study (DIPP). Sci Rep 2018 Jul; 8(1):10635. doi: 10.1038/s41598-018-28907-8.

217. Ihantola EL, Viisanen T, Gazali AM, Näntö-Salonen K, Juutilainen A, Moilanen L, Rintamäki R, Pihlajamäki J, Veijola R, Toppari J, Knip M, Ilonen J, Kinnunen T. Effector T Cell Resistance to Suppression and STAT3 Signaling during the Development of Human Type 1 Diabetes. J Immunol 2018 Aug;201(4):1144-1153. doi: 10.4049/jimmunol.1701199.

218. Koskinen MK, Lempainen J, Löyttyniemi E, Helminen O, Hekkala A, Härkönen T, Kiviniemi M, Simell O, Knip M, Ilonen J, Toppari J, Veijola R. Class II HLA Genotype Association with First Phase Insulin Response Is Explained by Islet Autoantibodies. J Clin Endocrinol Metab 2018 Aug;103(8):2870-2878. doi: 10.1210/jc.2017-02040.

219. Prasad M, Takkinen HM, Uusitalo L, Tapanainen H, Ovaskainen ML, Alfthan G, Erlund I, Ahonen S, Åkerlund M, Toppari J, Ilonen J, Knip M, Veijola R, Virtanen SM. Carotenoid Intake and Serum Concentration in Young Finnish Children and Their Relation with Fruit and Vegetable Consumption. Nutrients 2018 Oct;10(10). pii: E1533. doi: 10.3390/nu10101533.

220. Lamichhane S, Ahonen L, Dyrlund TS, Siljander H, Hyöty H, Ilonen J, Toppari J, Veijola R, Hyötyläinen T, Knip M, Orešič M. A longitudinal plasma lipidomics dataset from children who developed islet autoimmunity and type 1 diabetes. Sci Data 2018 Nov; 5:180250. doi: 10.1038/sdata.2018.250.

221. Korhonen L, Seiskari T, Lehtonen J, Puustinen L, Surcel HM, Haapala AM, Niemelä O, Virtanen SM, Honkanen H, Karjalainen M, Ilonen J, Veijola R, Knip M, Lönnrot M, Hyöty H. Enterovirus infection during pregnancy is inversely associated with atopic disease in the offspring. Clin Exp Allergy 2018 Dec;48(12):1698-1704. doi: 10.1111/cea.13280.

2019

222. Lamichhane S, Ahonen L, Dyrlund TS, Dickens AM, Siljander H, Hyöty H, Ilonen J, Toppari J, Veijola R, Hyötyläinen T, Knip M, Oresic M. Cord-Blood Lipidome in Progression to Islet Autoimmunity and Type 1 Diabetes. Biomolecules 2019 Jan;9(1):33. doi: 10.3390/biom9010033.

223. Viisanen T, Gazali AM, Ihantola EL, Ekman I, Näntö-Salonen K, Veijola R, Toppari J, Knip M, Ilonen J, Kinnunen T. FOXP3+ Regulatory T Cell Compartment Is Altered in Children With Newly Diagnosed Type 1 Diabetes but Not in Autoantibody-Positive at-Risk Children. Front Immunol 2019 Jan;10:19. doi:10.3389/fimmu.2019.00019.

224. Ekman I, Vuorinen T, Knip M, Veijola R, Toppari J, Hyöty H, Kinnunen T, Ilonen J, Lempainen J. Early childhood CMV infection may decelerate the progression to clinical type 1 diabetes. Pediatr Diabetes 2019 Feb;20(1):73-77. doi: 10.1111/pedi.12788. Epub 2018 Nov 19.

225. Jääskeläinen AJ, Nurminen N, Kolehmainen P, Smura T, Tauriainen S, Toppari J, Ilonen J, Veijola R, Knip M, Hyöty H, Vapalahti O, Kallio-Kokko H. No Association Between Ljungan Virus Seropositivity and the Beta-cell Damaging Process in the Finnish Type 1 Diabetes Prediction and Prevention Study Cohort. Pediatr Infect Dis J 2019 Mar; 38(3):314-316. doi: 10.1097/INF.0000000000002201.

226. Malm M, Hyöty H, Knip M, Vesikari T, Blazevic V. Development of T cell immunity to norovirus and rotavirus in children under five years of age. Sci Rep 2019 Mar 1;9(1):3199. doi: 10.1038/s41598-019-39840-9.

227. Sen P, Carlsson C, Virtanen SM, Simell S, Hyöty H, Ilonen J, Toppari J, Veijola R, Hyötyläinen T, Knip M, Orešič M. Persistent Alterations in Plasma Lipid Profiles Before Introduction of Gluten in the Diet Associated With Progression to Celiac Disease. Clin Transl Gastroenterol 2019 May; 22;10(5):1-10. doi: 10.14309/ctg.0000000000000044.

228. Syrjälä E, Nevalainen J, Peltonen J, Takkinen HM, Hakola L, Åkerlund M, Veijola R, Ilonen J, Toppari J, Knip M, Virtanen SM. A Joint Modeling Approach for Childhood Meat, Fish and Egg Consumption and the Risk of Advanced Islet Autoimmunity. Sci Rep 2019 May 23;9(1):7760. doi: 10.1038/s41598-019-44196-1. PubMed PMID: 31123290; PubMed Central PMCID: PMC6533366.

229. Mäkinen M, Löyttyniemi E, Koskinen M, Vähä-Mäkilä M, Siljander H, Nurmio M, Mykkänen J, Virtanen SM, Simell O, Hyöty H, Ilonen J, Knip M, Veijola R, Toppari J. Serum 25-Hydroxyvitamin D Concentrations at Birth in Children Screened for HLA-DQB1 Conferred Risk for Type 1 Diabetes. J Clin Endocrinol Metab 2019 Jun 1;104(6):2277-2285. doi: 10.1210/jc.2018-02094.

230. Ekman I, Ihantola EL, Viisanen T, Rao DA, Näntö-Salonen K, Knip M, Veijola R, Toppari J, Ilonen J, Kinnunen T. Circulating CXCR5(-)PD-1(hi) peripheral T helper cells are associated with progression to type 1 diabetes. Diabetologia 2019 Sep;62(9):1681-1688. doi: 10.1007/s00125-019-4936-8. Epub 2019 Jul 3. PubMed PMID: 31270583.

231. Bauer W, Veijola R, Lempainen J, Kiviniemi M, Härkönen T, Toppari J, Knip M, Gyenesei A, Ilonen J. Age at Seroconversion, HLA Genotype, and Specificity of Autoantibodies in Progression of Islet Autoimmunity in Childhood. J Clin Endocrinol Metab. 2019 Oct;104(10):4521-4530. doi: 10.1210/jc.2019-00421.

232. Hakola L, Miettinen ME, Syrjälä E, Åkerlund M, Takkinen HM, Korhonen TE, Ahonen S, Ilonen J, Toppari J, Veijola R, Nevalainen J, Knip M, Virtanen SM. Association of Cereal, Gluten, and Dietary Fiber Intake With Islet Autoimmunity and Type 1 Diabetes. JAMA Pediatr. 2019 Oct 1;173(10):953-960. doi: 10.1001/jamapediatrics.2019.2564. PMID: 31403683.

233. Pöllänen PM, Lempainen J, Laine AP, Toppari J, Veijola R, Ilonen J, Siljander H, Knip M. Characteristics of Slow Progression to Type 1 Diabetes in Children With Increased HLA-Conferred Disease Risk. J Clin Endocrinol Metab 2019 Nov 1;104(11):5585-5594. doi: 10.1210/jc.2019-01069.

234. Lamichhane S, Kemppainen E, Trošt K, Siljander H, Hyöty H, Ilonen J, Toppari J, Veijola R, Hyötyläinen T, Knip M, Orešič M. Circulating metabolites in progression to islet autoimmunity and type 1 diabetes. Diabetologia 2019 Dec;62(12):2287-2297. doi: 10.1007/s00125-019-04980-0. Epub 2019 Aug 23.

2020

235. Koskinen MK, Mikk ML, Laine AP, Lempainen J, Löyttyniemi E, Vähäsalo P, Hekkala A, Härkönen T, Kiviniemi M, Simell O, Knip M, Veijola R, Ilonen J, Toppari J. Longitudinal Pattern of First-Phase Insulin Response Is Associated With Genetic Variants Outside the Class II HLA Region in Children With Multiple Autoantibodies. Diabetes 2020 Jan;69(1):12-19. doi: 10.2337/db19-0329. Epub 2019 Oct 7

236. Yeo L, Pujol-Autonell I, Baptista R, Eichmann M, Kronenberg-Versteeg D, Heck S, Dolton G, Sewell AK, Härkönen T, Mikk ML, Toppari J, Veijola R, Knip M, Ilonen J, Peakman M. Circulating β cell-specific CD8+ T cells restricted by high-risk HLA class I molecules show antigen experience in children with and at risk of type 1 diabetes. Clin Exp Immunol 2020;199(3):263-277. doi: 10.1111/cei.13391. Epub 2019 Nov 10.

237. Ojwang V, Nwaru BI, Takkinen HM, Kaila M, Niemelä O, Haapala AM, Ilonen J, Toppari J, Hyöty H, Veijola R, Knip M, Virtanen SM. Early exposure to cats, dogs and farm animals and the risk of childhood asthma and allergy. Pediatr Allergy Immunol. 2020 Apr;31(3):265-272. doi: 10.1111/pai.13186. Epub 2020 Jan 11.PMID: 31829464.

238. Valta M, Gazali AM, Viisanen T, Ihantola EL, Ekman I, Toppari J, Knip M, Veijola R, Ilonen J, Lempainen J, Kinnunen T. Type 1 diabetes linked PTPN22 gene polymorphism is associated with the frequency of circulating regulatory T cells. Eur J Immunol 2020 Apr;50(4):581-588. doi: 10.1002/eji.201948378. Epub 2019 Dec 19.

239. Ihantola EL, Ilmonen H, Kailaanmäki A, Rytkönen-Nissinen M, Azam A, Maillère B, Lindestam Arlehamn CS, Sette A, Motwani K, Seay HR, Brusko TM, Knip M, Veijola R, Toppari J, Ilonen J, Kinnunen T. Characterization of Proinsulin T Cell Epitopes Restricted by Type 1 Diabetes-Associated HLA Class II Molecules. J Immunol. 2020 May 1;204(9):2349-2359. doi: 10.4049/jimmunol.1901079. Epub 2020 Mar 30.

240. Sen P, Dickens AM, López-Bascón MA, Lindeman T, Kemppainen E, Lamichhane S, Rönkkö T, Ilonen J, Toppari J, Veijola R, Hyöty H, Hyötyläinen T, Knip M, Orešič M. Metabolic alterations in immune cells associate with progression to type 1 diabetes. Diabetologia 2020 May;63(5):1017-1031. doi: 10.1007/s00125-020-05107-6. Epub 2020 Feb 11.

241. Saarinen NVV, Lehtonen J, Veijola R, Lempainen J, Knip M, Hyöty H, Laitinen OH, Hytönen VP. Multiplexed High-Throughput Serological Assay for Human Enteroviruses. Microorganisms 2020 Jun 26;8(6):E963. doi: 10.3390/microorganisms8060963.

242. Koivusaari K, Syrjälä E, Niinistö S, Takkinen HM, Ahonen S, Åkerlund M, Korhonen TE, Toppari J, Ilonen J, Peltonen J, Nevalainen J, Knip M, Alatossava T, Veijola R, Virtanen SM. Consumption of differently processed milk products in infancy and early childhood and the risk of islet autoimmunity. Br J Nutr. 2020 Jul 28;124(2):173-180. doi: 10.1017/S0007114520000744. Epub 2020 Feb 27.

243. Saarinen NVV, Lehtonen J, Veijola R, Lempainen J, Knip M, Hyöty H, Laitinen OH, Hytönen VP. Correction: Multiplexed High-Throughput Serological Assay for Human Enteroviruses. Microorganisms 2020 Sep 17;8(9):E1426. doi: 10.3390/microorganisms8091426.

244. Sane F, Bertin A, Sioofy-Khojine AB, Oikarinen S, Alidjinou EK, Veijola R, Toppari J, Ilonen J, Knip M, Engelmann I, Hyöty H, Hober D. Enhancing and neutralizing anti-coxsackievirus activities in serum samples from patients prior to development of type 1 diabetes. Diabetes Metab Res Rev. 2020 Sep;36(6):e3305. doi: 10.1002/dmrr.3305. Epub 2020 Mar 25.

245. Sinisalu L, Sen P, Salihović S, Virtanen SM, Hyöty H, Ilonen J, Toppari J, Veijola R, Orešič M, Knip M, Hyötyläinen T. Early-life exposure to perfluorinated alkyl substances modulates lipid metabolism in progression to celiac disease. Environ Res 2020 Sep;188:109864. doi: 10.1016/j.envres.2020.109864. Epub 2020 Jun 30.

246. Gazali AM, Schroderus AM, Näntö-Salonen K, Rintamäki R, Pihlajamäki J, Knip M, Veijola R, Toppari J, Ilonen J, Kinnunen T. Mucosal-associated invariant T cell alterations during the development of human type 1 diabetes. 2020 Nov;63(11):2396-2409. doi: 10.1007/s00125-020-05257-7. Epub 2020 Sep 3.PMID: 32880687.

247. Mattila M, Niinistö S, Takkinen HM, Tapanainen H, Reinivuo H, Åkerlund M, Suomi J, Ahonen S, Ilonen J, Toppari J, Knip M, Veijola R, Virtanen SM. Maternal Nitrate and Nitrite Intakes during Pregnancy and Risk of Islet Autoimmunity and Type 1 Diabetes: The DIPP Cohort Study. J Nutr. 2020 Nov 19;150(11):2969-2976.  doi: 10.1093/jn/nxaa250.

248. Mikk ML, Pfeiffer S, Kiviniemi M, Laine AP, Lempainen J, Härkönen T, Toppari J, Veijola R, Knip M, Ilonen J. HLA-DR-DQ haplotypes and specificity of the initial autoantibody in islet specific autoimmunity; Finnish Pediatric Diabetes Register. Pediatr Diabetes 2020 Nov;21(7):1218-1226. doi: 10.1111/pedi.13073. Epub 2020 Jul 23.

249. Kuusela S, Keskinen P, Pokka T, Knip M, Ilonen J, Vähäsalo P, Veijola R. Extended family history of type 1 diabetes in HLA-predisposed children with and without islet autoantibodies. Pediatr Diabetes 2020 Dec;21(8):1447-1456.  doi: 10.1111/pedi.13122. Epub 2020 Oct 1.

250. Pöllänen PM, Ryhänen SJ, Toppari J, Ilonen J, Vähäsalo P, Veijola R, Siljander H, Knip M. Dynamics of Islet Autoantibodies During Prospective Follow-Up from Birth up to 15 Years of Age. J Clin Endocrinol Metab. 2020 Dec 1;105(12):e4638-e4651.  doi: 10.1210/clinem/dgaa624.

2021

251. Maleta K, Fan YM, Luoma J, Ashorn U, Bendabenda J, Dewey KG, Hyöty H, Knip M, Kortekangas E, Lehto KM, Matchado A, Nkhoma M, Nurminen N, Parkkila S, Purmonen S, Veijola R, Oikarinen S, Ashorn P. Infections and systemic inflammation are associated with lower plasma concentration of insulin-like growth factor I among Malawian children. Am J Clin Nutr. 2021 Feb 2;113(2):380-390.  doi: 10.1093/ajcn/nqaa327.

252. Oikarinen M, Puustinen L, Lehtonen J, Hakola L, Simell S, Toppari J, Ilonen J, Veijola R, Virtanen SM, Knip M, Hyöty H. Enterovirus infections are associated with the development of celiac disease in a birth cohort study. Front Immunol. 2021 Feb 2;11:604529. doi: 10.3389/fimmu.2020.604529. eCollection 2020. PMID: 33603739.

253. Mattila M, Hakola L, Niinistö S, Tapanainen H, Takkinen HM, Ahonen S, Ilonen J, Toppari J, Veijola R, Knip M, Virtanen SM. Maternal Vitamin C and Iron Intake during Pregnancy and the Risk of Islet Autoimmunity and Type 1 Diabetes in Children: A Birth Cohort Study. Nutrients 2021 Mar 13;13(3):928. doi: 10.3390/nu13030928.

254. Steck AK, Liu X, Krischer JP, Haller MJ, Veijola R, Lundgren M, Ahmed S, Akolkar B, Toppari J, Hagopian WA, Rewers MJ, Elding Larsson H. Factors Associated With the Decline of C-Peptide in a Cohort of Young Children Diagnosed With Type 1 Diabetes. J Clin Endocrinol Metab. 2021 Mar 8;106(3):e1380-e1388. doi: 10.1210/clinem/dgaa715.

255. Stoicescu O, Ferreira E, Tamminen S, Siirtola P, Chandra G, Veijola R, Röning J. ClinFlow – An Interactive Application for Clinical Data Mining. Stud Health Technol Inform. 2021 May 27;281:268-272. doi: 10.3233/SHTI210162.

256. Tuokkola J, Lamminsalo A, Metsälä J, Takkinen HM, Tapanainen H, Åkerlund M, Niinistö S, Toppari J, Ilonen J, Veijola R, Knip M, Kaila M, Virtanen SM. Maternal antioxidant intake during pregnancy and the development of cow’s milk allergy in the offspring. Br J Nutr. 2021 Jun 28;125(12):1386-1393. doi: 10.1017/S0007114520003633. Epub 2020 Sep 18.

257. Anand V, Li Y, Liu B, Ghalwash M, Koski E, Ng K, Dunne JL, Jönsson J, Winkler C, Knip M, Toppari J, Ilonen J, Killian MB, Frohnert BI, Lundgren M, Ziegler AG, Hagopian W, Veijola R, Rewers M; T1DI Study Group. Islet Autoimmunity and HLA Markers of Presymptomatic and Clinical Type 1 Diabetes: Joint Analyses of Prospective Cohort Studies in Finland, Germany, Sweden, and the U.S. Diabetes Care 2021 Jun;44(10):2269-2276. doi: 10.2337/dc20-1836. PMID:34162665.

258. Nurminen N, Cerrone D, Lehtonen J, Parajuli A, Roslund M, Lönnrot M, Ilonen J, Toppari J, Veijola R, Knip M, Rajaniemi J, Laitinen OH, Sinkkonen A, Hyöty H. Land Cover of Early Life Environment Modulates the Risk of Type 1 Diabetes. Diabetes Care 2021 Jul;44(7):1506-1514.  doi: 10.2337/dc20-1719. Epub 2021 May 5.

259. Syrjälä E, Niinikoski H, Virtanen HE, Ilonen J, Knip M, Hutri-Kähönen N, Pahkala K, Raitakari OT, Rodprasert W, Toppari J, Virtanen SM, Veijola R, Peltonen J, Nevalainen J. Determining the timing of pubertal onset via a multicohort analysis of growth. PLoS One. 2021 Nov 18;16(11):e0260137. doi: 10.1371/journal.pone.0260137. eCollection 2021.

260. Palmu T, Lehtonen J, Korhonen L, Virtanen SM, Niemelä O, Toppari J, Ilonen J, Veijola R, Knip M, Laitinen OH, Lönnrot M, Hyöty H. Association of different enteroviruses with atopy and allergic diseases in early childhood. Pediatr Allergy Immunol 2021 Nov;32(8):1629-1636.  doi: 10.1111/pai.13577. Epub 2021 Jul 16.

261. Nevalainen J, Datta S, Toppari J, Ilonen J, Hyöty H, Veijola R, Knip M, Virtanen SM. Frailty modeling under a selective sampling protocol: an application to type 1 diabetes related autoantibodies. Stat Med 2021 Dec 10;40(28):6410-6420. doi: 10.1002/sim.9190. Epub 2021 Sep 8.

262. Nygård L, Laine AP, Kiviniemi M, Toppari J, Härkönen T, Knip M, Veijola R, Lempainen J, Ilonen J. Tri-SNP polymorphism in the intron of HLA-DRA1 affects type 1 diabetes susceptibility in the Finnish population. Hum Immunol 2021 Dec;82(12):912-916.  doi: 10.1016/j.humimm.2021.07.010. Epub 2021 Jul 24.

2022

263. Koivusaari K, Syrjälä E, Niinistö S, Ahonen S, Åkerlund M, Korhonen TE, Toppari J, Ilonen J, Kaila M, Knip M, Alatossava T, Veijola R, Virtanen SM. Consumption of differently processed milk products and the risk of asthma in children. Pediatr Allergy Immunol. 2022 Jan;33(1):e13659. doi: 10.1111/pai.13659. Epub 2021 Sep 12.PMID: 34472138.

264. Ng K, Stavropoulos H, Anand V, Veijola R, Toppari J, Maziarz M, Lundgren M, Waugh K, Frohnert BI, Martin F, Hagopian W, Achenbach P; T1DI Study Group. Islet Autoantibody Type-Specific Titer Thresholds Improve Stratification of Risk of Progression to Type 1 Diabetes in Children. Diabetes Care. 2022 Jan 1;45(1):160-168. doi: 10.2337/dc21-0878.

265. Pöllänen PM, Härkönen T, Ilonen J, Toppari J, Veijola R, Siljander H, Knip M. Autoantibodies to N-Terminally Truncated GAD65(96-585): HLA Associations and Predictive Value for Type 1 Diabetes. J Clin Endocrinol Metab 2022 Feb 17;107(3):e935-e946.  doi: 10.1210/clinem/dgab816.

266. Kwon BC, Anand V, Achenbach P, Dunne JL, Hagopian W, Hu J, Koski E, Lernmark Å, Lundgren M, Ng K, Toppari J, Veijola R, Frohnert BI; T1DI Study Group. Progression of type 1 diabetes from latency to symptomatic disease is predicted by distinct autoimmune trajectories. Nat Commun. 2022 Mar 21;13(1):1514. doi: 10.1038/s41467-022-28909-1.

267. Suomi T, Kalim UU, Rasool O, Laiho A, Kallionpää H, Vähä-Mäkilä M, Nurmio M, Mykkänen J, Härkönen T, Hyöty H, Ilonen J, Veijola R, Toppari J, Knip M, Elo LL, Lahesmaa R. SType 1 Diabetes in Children With Genetic Risk May Be Predicted Very Early With a Blood miRNA. Diabetes Care 2022 Apr 1;45(4):e77-e79. doi: 10.2337/dc21-2120.

268. Laine AP, Valta M, Toppari J, Knip M, Veijola R, Ilonen J, Lempainen J. Non-HLA Gene Polymorphisms in the Pathogenesis of Type 1 Diabetes: Phase and Endotype Specific Effects. Front Immunol. 2022 Jun 21;13:909020. doi: 10.3389/fimmu.2022.909020. eCollection 2022.

269. Li Z, Veijola R, Koski E, Anand V, Martin F, Waugh K, Hyöty H, Winkler C, Killian MB, Lundgren M, Ng K, Maziarz M, Toppari J. Childhood height growth rate association with the risk of islet autoimmunity and development of type 1 diabetes. Journal of Clin Endocr & Metab 2022 Jun 107;6:1520-1528. https://doi.org/10.1210/clinem/dgac121.

270. Väisänen E, Kuisma I, Mäkinen M, Ilonen J, Veijola R, Toppari J, Hedman K, Söderlund-Venermo M. Torque Teno Virus Primary Infection Kinetics in Early Childhood. 2022 Jun 11;14(6):1277. doi: 10.3390/v14061277.

271. Ghalwash M, Dunne JL, Lundgren M, Rewers M, Ziegler AG, Anand V, Toppari J, Veijola R, Hagopian W; Type 1 Diabetes Intelligence Study Group. Two-age islet-autoantibody screening for childhood type 1 diabetes: a prospective cohort study. Lancet Diabetes Endocrinol. 2022 Aug;10(8):589-596. doi: 10.1016/S2213-8587(22)00141-3.

272. Helminen O, Pokka T, Aspholm S, Ilonen J, Simell OG, Knip M, Veijola R. First-emerging islet autoantibody and glucose metabolism: search for type 1 diabetes subtypes. Endocr Connect 2022 Aug 17;11(9):e210632.  doi: 10.1530/EC-21-0632. Print 2022 Sep 1.

273. Helminen O, Pokka T, Aspholm S, Ilonen J, Simell O, Knip M, Veijola R. Early glucose metabolism in children at risk for type 1 diabetes based on islet autoantibodies compared to low-risk control groups. Front Endocrinol (Lausanne). 2022 Sep 12;13:972714. doi: 10.3389/fendo.2022.972714. eCollection 2022.

274. Kontola HME, Alanko IE, Koskenniemi J, Löyttyniemi E, Itoshima S, Knip M, Veijola R, Toppari J, Kero J. Exploring minimally invasive approach to define stages of type 1 diabetes remotely. Diabetes Technol Ther 2022 Sep;24(9):655-665.  doi: 10.1089/dia.2021.0554. Epub 2022 Jun 20.

275. Laajala E, Kalim UU, Grönroos T, Rasool O, Halla-Aho V, Konki M, Kattelus R, Mykkänen J, Nurmio M, Vähä-Mäkilä M, Kallionpää H, Lietzén N, Ghimire BR, Laiho A, Hyöty H, Elo LL, Ilonen J, Knip M, Lund RJ, Orešič M, Veijola R, Lähdesmäki H, Toppari J, Lahesmaa R. Umbilical cord blood DNA methylation in children who later develop type 1 diabetes. Diabetologia 2022 Sep;65(9):1534-1540.  doi: 10.1007/s00125-022-05726-1. Epub 2022 Jun 18.

276. Valta M, Yoshihara M, Einarsdottir E, Pahkuri S, Ezer S, Katayama S, Knip M, Veijola R, Toppari J, Ilonen J, Kere J, Lempainen J. Viral infection-related gene upregulation in monocytes in children with signs of β-cell autoimmunity. Pediatr Diabetes 2022 Sep;23(6):703-713. doi: 10.1111/pedi.13346. Epub 2022 Apr 25.

277. Kero J, Koskenniemi JJ, Karsikas S, Pokka T, Lou O, Toppari J, Veijola R. INnoVative trial design for testing the Efficacy, Safety and Tolerability of 6-month treatment with incretin-based therapy to prevent type 1 DIAbetes in autoantibody positive participants: A protocol for three parallel double-blind, randomised controlled trials (INVESTDIA). Diabet Med 2022 Oct;39(10):e14913. doi: 10.1111/dme.14913. Epub 2022 Jul 22.

278. Lamminsalo A, Metsälä J, Takkinen HM, Tapanainen H, Åkerlund M, Niinistö S, Toppari J, Ilonen J, Veijola R, Knip M, Kaila M, Virtanen SM. Maternal energy-adjusted fatty acid intake during pregnancy and the development of cow’s milk allergy in the offspring. Br J Nutr. 2022 Oct 28;128(8):1607-1614.  doi: 10.1017/S0007114521004475. Epub 2021 Nov 12.

279. Sioofy-Khojine AB, Richardson SJ, Locke JM, Oikarinen S, Nurminen N, Laine AP, Downes K, Lempainen J, Todd JA, Veijola R, Ilonen J, Knip M, Morgan NG, Hyöty H, Peakman M, Eichmann M. Detection of enterovirus RNA in peripheral blood mononuclear cells correlates with the presence of the predisposing allele of the type 1 diabetes risk gene IFIH1 and with disease stage. Diabetologia 2022 Oct;65(10):1701-1709.  doi: 10.1007/s00125-022-05753-y. Epub 2022 Jul 22.

280. Kwon BC, Achenbach P, Anand V, Frohnert BI, Hagopian W, Hu J, Koski E, Lernmark Å, Lou O, Martin F, Ng K, Toppari J, Veijola R; T1DI Study Group. Islet Autoantibody Levels Differentiate Progression Trajectories in Individuals with Presymptomatic Type 1 Diabetes. Diabetes 2022 Dec 1;71(12):2632-2641.  doi: 10.2337/db22-0360.

2023

281. Ng K, Anand V, Stavropoulos H, Veijola R, Toppari J, Maziarz M, Lundgren M, Waugh K, Frohnert BI, Martin F, Lou O, Hagopian W, Achenbach P; T1DI Study Group. Quantifying the utility of islet autoantibody levels in the prediction of type 1 diabetes in children. Diabetologia 2023 Jan;66(1):93-104. doi: 10.1007/s00125-022-05799-y.

282. Metsälä J, Vuorinen AL, Takkinen HM, Peltonen EJ, Ahonen S, Åkerlund M, Tapanainen H, Mattila M, Toppari J, Ilonen J, Veijola R, Haahtela T, Knip M, Kaila M, Virtanen SM. Longitudinal consumption of fruits and vegetables and risk of asthma by 5 years of age. Pediatr Allergy Immunol. 2023 Mar;34(3):e13932. doi: 10.1111/pai.13932.

283. Hakola L, Vuorinen AL, Takkinen HM, Niinistö S, Ahonen S, Rautanen J, Peltonen EJ, Nevalainen J, Ilonen J, Toppari J, Veijola R, Knip M, Virtanen SM. Dietary fatty acid intake in childhood and the risk of islet autoimmunity and type 1 diabetes: the DIPP birth cohort study. Eur J Nutr. 2023 Mar;62(2):847-856. doi: 10.1007/s00394-022-03035-2. Epub 2022 Oct 25.

284. Ghalwash M, Anand V, Lou O, Martin F, Rewers M, Ziegler AG, Toppari J, Hagopian WA, Veijola R, and the T1DI Study Group. Islet Autoantibody Screening in at-risk Adolescents to Predict Type 1 Diabetes until Young Adulthood: a Prospective Cohort Study. Lancet Child Adolesc Health. 2023 Apr;7(4):261-268. doi: 10.1016/S2352-4642(22)00350-9. Epub 2023 Jan 18.

285. Sioofy-Khojine AB, Lehtonen JP, Nurminen N, Laiho JE, Toppari J, Veijola R, Lempainen J, Ilonen J, Knip M, Hyöty H. HLA-DQ-conferred risk for type 1 diabetes does not alter neutralizing antibody response to a widely used enterovirus vaccine, the poliovirus vaccine. J Med Virol. 2023 Apr;95(4):e28707. doi: 10.1002/jmv.28707.

286. Peltonen EJ, Veijola R, Ilonen J, Knip M, Niinikoski H, Toppari J, Virtanen HE, Virtanen SM, Peltonen J, Nevalainen J. What is the role of puberty in the development of islet autoimmunity and progression to type 1 diabetes? Eur J Epidemiol. 2023 Jun;38(6):689-697. doi: 10.1007/s10654-023-01002-7. Epub 2023 Apr 20.

287. Schroderus AM, Poorbaugh J, McElyea S, Beasley S, Zhang L, Näntö-Salonen K, Rintamäki R, Pihlajamäki J, Knip M, Veijola R, Toppari J, Ilonen J, Benschop RJ, Kinnunen T. Evaluation of plasma IL-21 as a potential biomarker for type 1 diabetes progression. Front Immunol. 2023 Jun 21;14:1157265. doi: 10.3389/fimmu.2023.1157265. eCollection 2023.

288. Lamichhane S, Sen P, Dickens AM, Kråkström M, Ilonen J, Lempainen J, Hyöty H, Lahesmaa R, Veijola R, Toppari J, Hyötyläinen T, Knip M, Orešič M. Circulating metabolic signatures of rapid and slow progression to type 1 diabetes in islet autoantibody-positive children. Front Endocrinol (Lausanne). 2023 Sep 6;14:1211015. doi: 10.3389/fendo.2023.1211015. eCollection 2023.

289. Hirvonen MK, Lietzén N, Moulder R, Bhosale SD, Koskenniemi J, Vähä-Mäkilä M, Nurmio M, Orešič M, Ilonen J, Toppari J, Veijola R, Hyöty H, Lähdesmäki H, Knip M, Cheng L, Lahesmaa R. Serum APOC1 levels are decreased in young autoantibody positive children who rapidly progress to type 1 diabetes. Sci Rep. 2023 Sep 24;13(1):15941. doi: 10.1038/s41598-023-43039-4.

290. Frohnert BI, Ghalwash M, Li Y, Ng K, Dunne JL, Lundgren M, Hagopian W, Lou O, Winkler C, Toppari J, Veijola R, Anand V; T1DI Study Group. Refining the Definition of Stage 1 Type 1 Diabetes: An Ontology-Driven Analysis of the Heterogeneity of Multiple Islet Autoimmunity. Diabetes Care. 2023 Oct 1;46(10):1753-1761. doi: 10.2337/dc22-1960.

291. Salo TEI, Niinistö S, Korhonen TE, Pastell H, Reinivuo H, Takkinen HM, Ilonen J, Toppari J, Knip M, Veijola R, Virtanen SM. Intake and sources of dietary fibre and dietary fibre fractions in Finnish children. Br J Nutr. 2023 Oct 28;130(8):1416-1426. doi: 10.1017/S0007114523000466. Epub 2023 Feb 21.

292. Nygård L, Valta M, Laine AP, Toppari J, Knip M, Veijola R, Hyöty H, Ilonen J, Lempainen J. CXADR polymorphism rs6517774 modifies islet autoimmunity characteristics and exhibits sex disparity. Front Genet. 2023 Nov 2;14:1248701. doi: 10.3389/fgene.2023.1248701. eCollection 2023.

293. Pahkuri S, Ekman I, Vandamme C, Näntö-Salonen K, Toppari J, Veijola R, Knip M, Kinnunen T, Ilonen J, Lempainen J. DNA methylation differences within INS, PTPN22 and IL2RA promoters in lymphocyte subsets in children with type 1 diabetes and controls. Autoimmunity. 2023 Dec;56(1):2259118. doi: 10.1080/08916934.2023.2259118. Epub 2023 Sep 19.

2024

294. Mattila M, Takkinen HM, Peltonen EJ, Vuorinen AL, Niinistö S, Metsälä J, Ahonen S, Åkerlund M, Hakola L, Toppari J, Ilonen J, Veijola R, Haahtela T, Knip M, Virtanen SM. Fruit, berry, and vegetable consumption and the risk of islet autoimmunity and type 1 diabetes in children-the Type 1 Diabetes Prediction and Prevention birth cohort study. Am J Clin Nutr. 2024 Feb;119(2):537-545. doi: 10.1016/j.ajcnut.2023.12.014. Epub 2023 Dec 23.

Review articles

1. Hyöty H. Enterovirus infections and type 1 diabetes. Ann Med 2002;34:138-147. doi: 10.1080/ann.34.3.138.147.

2. Ilonen J, Sjöroos M, Knip M, Veijola R, Simell O, Åkerblom HK, Paschou P, Bozas E, Havarani B, Malamitsi-Puchner A, Thymelli J, Bartsocas CS. Estimation of Genetic Risk for Type 1 Diabetes. Am J Med Genet 2002;115:30-36. doi: 10.1002/ajmg.10341.

3. Knip M, Kukko M, Kulmala P, Veijola R, Simell O, Åkerblom HK, Ilonen J. Humoral Beta-Cell Autoimmunity in Relation to HLA-Defined Disease Susceptibility in Preclinical and Clinical Type 1 Diabetes. Am J Med Genet 2002;115:48-54. doi: 10.1002/ajmg.10343.

4. Tauriainen S, Salminen K, Hyöty H. Can Enteroviruses Cause Type 1 Diabetes? Ann N Y Acad Sci 2003;1005:13-22. doi: 10.1196/annals.1288.003.

5. Hyöty H. Environmental causes: viral causes. Endocrin Metab Clin North Am 2004;33:27-44. doi: 10.1016/j.ecl.2003.12.004.

6. Knip M, Veijola R, Virtanen SM, Hyöty H, Vaarala O, Åkerblom HK. Environmental Triggers and Determinants of Type 1 Diabetes. Diabetes 2005;54,Suppl.2:S125-S136. doi: 10.2337/diabetes.54.suppl_2.S125.

7. Hyöty H. Enteroviruses and Type-1 Diabetes: Overview of Epidemiological Studies. J Med Virol 2009;81:197-198. doi: 10.1002/jmv.21354.

8. Tauriainen S, Oikarinen S, Oikarinen M, Hyöty H. Enteroviruses in the pathogenesis of type 1 diabetes. Semin Immunopathol 2011;33:45-55. doi: 10.1007/s00281-010-0207-y.

9. Knip M, Simell O. Environmental triggers of type 1 diabetes. Cold Spring Harb Perspect Med 2012;2:a007690. doi: 10.1101/cshperspect.a007690.

10. Lempainen J, Ilonen J. Influence of Type 1 Diabetes Genes on Disease Progression: Similarities and Differences Between Countries. Curr Diab Rep 2012;12:447-455. doi: 10.1007/s11892-012-0310-7.

11. Nurminen N, Oikarinen S, Hyöty H. Virus Infections as Potential Targets of Preventive Treatments for Type 1 Diabetes.Rev Diabet Stud 2012;9:260-271. doi: 10.1900/RDS.2012.9.260.

12. Ilonen J, Knip M, Vaarala O. Heterogeneity in diabetes-associated autoantibodies and susceptibility to Type 1 diabetes: lessons for disease prevention. Expert Rev Endocrinol Metab 2015;10:25-34. doi: 10.1586/17446651.2015.955474.

13. Knip M, Siljander H. The role of the intestinal microbiota in type 1 diabetes mellitus. Nat Rev Endocrinol. 2016;12:154-167. doi: 10.1038/nrendo.2015.218.

14. Hyöty H. Viruses in type 1 diabetes. Pediatr Diabetes. 2016;17 (Suppl 22):56-64. doi: 10.1111/pedi.12370. doi: 10.1128/CVI.00341-16.

15. Ilonen J, Kiviniemi M, Lempainen J, Simell O, Toppari J, Veijola R, Knip M; Finnish Pediatric Diabetes Register. Genetic susceptibility to type 1 diabetes in childhood – estimation of HLA class II associated disease risk and class II effect in various phases of islet autoimmunity. Pediatr Diabetes. 2016;17 (Suppl 22):8-16. doi: 10.1111/pedi.12327.

16. Knip M, Siljander H, Ilonen J, Simell O, Veijola R. Role of humoral beta-cell autoimmunity in type 1 diabetes. Pediatr Diabetes. 2016; 17 (Suppl 22):17-24. doi: 10.1111/pedi.12386.

17. Veijola R, Koskinen M, Helminen O, Hekkala A. Dysregulation of glucose metabolism in preclinical type 1 diabetes. Pediatr Diabetes. 2016;17 (Suppl 22):25-30. doi: 10.1111/pedi.12392.

18. Knip M. Diabetes: Loss of β-cell mass – an acute event before T1DM presentation? Nat Rev Endocrinol. 2017 13:253-254. doi: 10.1038/nrendo.2017.33.

19. Ilonen J, Lempainen J, Veijola R. The heterogeneous pathogenesis of type 1 diabetes mellitus. Nat Rev Endocrinol 2019 Nov;15(11):635-650. doi: 10.1038/s41574-019-0254-y. Epub 2019 Sep 18. Review.

Conference proceedings

1. Ilonen J, Reijonen H, Sjöroos M, Nejentsev S, Knip M, Simell O. Genetic screening for type 1 diabetes based on HLA-DQ typing in the general population. The Finnish diabetes prediction and prevention study. (B) In: JA Hansen, ed, Immunobiology of the human MHC. Proceedings of the 13th International Histocompatibility Workshop and Conference and the XIII International Congress of Histocompatibility and Immunogenetics. Vol II, IHWG Press, Seattle, WA, USA, 2006;368-371.

2. Kwon BC, Achenbach P, Dunne JL, Hagopian W, Lundgren M, Ng K, Veijola R, Frohnert BI, Anand V; T1DI Study Group. Modeling Disease Progression Trajectories from Longitudinal Observational Data. AMIA Annu Symp Proc. 2021 Jan 25;2020:668-676. eCollection 2020.

3. Li Y, Liu B, Anand V, Dunne JL, Lundgren M, Ng K, Rewers M, Veijola R, Ghalwash M, T1DI Study Group. Predicting Type 1 Diabetes Onset using Novel Survival Analysis with Biomarker Ontology. AMIA Annu Symp Proc. 2021 Jan 25;2020:727-736. eCollection 2020.

4. Li Z, Toppari J, Lundgren M, Frohnert BI, Achenbach P, Veijola R, Anand V; T1DI study group. Imputing Longitudinal Growth Data in International Pediatric Studies: Does CDC Reference Suffice? AMIA Annu Symp Proc. 2022 Feb 21;2021:754-762. eCollection 2021.

5. Ghalwash M, Koski E, Veijola R, Toppari J, Hagopian W, Rewers M, Anand V. Simulating Screening for Risk of Childhood Diabetes: The Collaborative Open Outcomes tooL (COOL). AMIA Annu Symp Proc. 2022 Feb 21;2021:516-525. eCollection 2021.

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